1VCV
Structure of 2-deoxyribose-5-phosphate aldolase from Pyrobaculum aerophilum
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004139 | molecular_function | deoxyribose-phosphate aldolase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006018 | biological_process | 2-deoxyribose 1-phosphate catabolic process |
| A | 0009264 | biological_process | deoxyribonucleotide catabolic process |
| A | 0016052 | biological_process | carbohydrate catabolic process |
| A | 0016829 | molecular_function | lyase activity |
| A | 0046386 | biological_process | deoxyribose phosphate catabolic process |
| B | 0004139 | molecular_function | deoxyribose-phosphate aldolase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006018 | biological_process | 2-deoxyribose 1-phosphate catabolic process |
| B | 0009264 | biological_process | deoxyribonucleotide catabolic process |
| B | 0016052 | biological_process | carbohydrate catabolic process |
| B | 0016829 | molecular_function | lyase activity |
| B | 0046386 | biological_process | deoxyribose phosphate catabolic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE ZN B 1001 |
| Chain | Residue |
| A | HIS3 |
| B | ASP211 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE ZN A 1002 |
| Chain | Residue |
| A | ASP211 |
| B | HIS3 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | ACT_SITE: Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00114 |
| Chain | Residue | Details |
| A | ASP84 | |
| A | LYS188 | |
| B | ASP84 | |
| B | LYS188 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | ACT_SITE: Schiff-base intermediate with acetaldehyde => ECO:0000255|HAMAP-Rule:MF_00114 |
| Chain | Residue | Details |
| A | LYS146 | |
| B | LYS146 |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1p1x |
| Chain | Residue | Details |
| A | ASP84 | |
| A | LYS146 | |
| A | LYS188 |
| site_id | CSA2 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1p1x |
| Chain | Residue | Details |
| B | ASP84 | |
| B | LYS146 | |
| B | LYS188 |
