1VCV
Structure of 2-deoxyribose-5-phosphate aldolase from Pyrobaculum aerophilum
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0004139 | molecular_function | deoxyribose-phosphate aldolase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006018 | biological_process | 2-deoxyribose 1-phosphate catabolic process |
A | 0009264 | biological_process | deoxyribonucleotide catabolic process |
A | 0016052 | biological_process | carbohydrate catabolic process |
A | 0016829 | molecular_function | lyase activity |
A | 0046386 | biological_process | deoxyribose phosphate catabolic process |
B | 0003824 | molecular_function | catalytic activity |
B | 0004139 | molecular_function | deoxyribose-phosphate aldolase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006018 | biological_process | 2-deoxyribose 1-phosphate catabolic process |
B | 0009264 | biological_process | deoxyribonucleotide catabolic process |
B | 0016052 | biological_process | carbohydrate catabolic process |
B | 0016829 | molecular_function | lyase activity |
B | 0046386 | biological_process | deoxyribose phosphate catabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ZN B 1001 |
Chain | Residue |
A | HIS3 |
B | ASP211 |
site_id | AC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ZN A 1002 |
Chain | Residue |
A | ASP211 |
B | HIS3 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00114 |
Chain | Residue | Details |
A | ASP84 | |
A | LYS188 | |
B | ASP84 | |
B | LYS188 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | ACT_SITE: Schiff-base intermediate with acetaldehyde => ECO:0000255|HAMAP-Rule:MF_00114 |
Chain | Residue | Details |
A | LYS146 | |
B | LYS146 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1p1x |
Chain | Residue | Details |
A | ASP84 | |
A | LYS146 | |
A | LYS188 |
site_id | CSA2 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1p1x |
Chain | Residue | Details |
B | ASP84 | |
B | LYS146 | |
B | LYS188 |