1UPM
ACTIVATED SPINACH RUBISCO COMPLEXED WITH 2-CARBOXYARABINITOL 2 BISPHOSPHAT AND CA2+.
Functional Information from GO Data
Chain | GOid | namespace | contents |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0004497 | molecular_function | monooxygenase activity |
B | 0009507 | cellular_component | chloroplast |
B | 0009853 | biological_process | photorespiration |
B | 0015977 | biological_process | carbon fixation |
B | 0015979 | biological_process | photosynthesis |
B | 0016829 | molecular_function | lyase activity |
B | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
B | 0019253 | biological_process | reductive pentose-phosphate cycle |
B | 0046872 | molecular_function | metal ion binding |
E | 0000287 | molecular_function | magnesium ion binding |
E | 0004497 | molecular_function | monooxygenase activity |
E | 0009507 | cellular_component | chloroplast |
E | 0009853 | biological_process | photorespiration |
E | 0015977 | biological_process | carbon fixation |
E | 0015979 | biological_process | photosynthesis |
E | 0016829 | molecular_function | lyase activity |
E | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
E | 0019253 | biological_process | reductive pentose-phosphate cycle |
E | 0046872 | molecular_function | metal ion binding |
H | 0000287 | molecular_function | magnesium ion binding |
H | 0004497 | molecular_function | monooxygenase activity |
H | 0009507 | cellular_component | chloroplast |
H | 0009853 | biological_process | photorespiration |
H | 0015977 | biological_process | carbon fixation |
H | 0015979 | biological_process | photosynthesis |
H | 0016829 | molecular_function | lyase activity |
H | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
H | 0019253 | biological_process | reductive pentose-phosphate cycle |
H | 0046872 | molecular_function | metal ion binding |
K | 0000287 | molecular_function | magnesium ion binding |
K | 0004497 | molecular_function | monooxygenase activity |
K | 0009507 | cellular_component | chloroplast |
K | 0009853 | biological_process | photorespiration |
K | 0015977 | biological_process | carbon fixation |
K | 0015979 | biological_process | photosynthesis |
K | 0016829 | molecular_function | lyase activity |
K | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
K | 0019253 | biological_process | reductive pentose-phosphate cycle |
K | 0046872 | molecular_function | metal ion binding |
L | 0000287 | molecular_function | magnesium ion binding |
L | 0004497 | molecular_function | monooxygenase activity |
L | 0009507 | cellular_component | chloroplast |
L | 0009853 | biological_process | photorespiration |
L | 0015977 | biological_process | carbon fixation |
L | 0015979 | biological_process | photosynthesis |
L | 0016829 | molecular_function | lyase activity |
L | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
L | 0019253 | biological_process | reductive pentose-phosphate cycle |
L | 0046872 | molecular_function | metal ion binding |
O | 0000287 | molecular_function | magnesium ion binding |
O | 0004497 | molecular_function | monooxygenase activity |
O | 0009507 | cellular_component | chloroplast |
O | 0009853 | biological_process | photorespiration |
O | 0015977 | biological_process | carbon fixation |
O | 0015979 | biological_process | photosynthesis |
O | 0016829 | molecular_function | lyase activity |
O | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
O | 0019253 | biological_process | reductive pentose-phosphate cycle |
O | 0046872 | molecular_function | metal ion binding |
R | 0000287 | molecular_function | magnesium ion binding |
R | 0004497 | molecular_function | monooxygenase activity |
R | 0009507 | cellular_component | chloroplast |
R | 0009853 | biological_process | photorespiration |
R | 0015977 | biological_process | carbon fixation |
R | 0015979 | biological_process | photosynthesis |
R | 0016829 | molecular_function | lyase activity |
R | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
R | 0019253 | biological_process | reductive pentose-phosphate cycle |
R | 0046872 | molecular_function | metal ion binding |
V | 0000287 | molecular_function | magnesium ion binding |
V | 0004497 | molecular_function | monooxygenase activity |
V | 0009507 | cellular_component | chloroplast |
V | 0009853 | biological_process | photorespiration |
V | 0015977 | biological_process | carbon fixation |
V | 0015979 | biological_process | photosynthesis |
V | 0016829 | molecular_function | lyase activity |
V | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
V | 0019253 | biological_process | reductive pentose-phosphate cycle |
V | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA B 476 |
Chain | Residue |
B | LYS177 |
B | KCX201 |
B | ASP203 |
B | GLU204 |
B | CAP477 |
site_id | AC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA E 476 |
Chain | Residue |
E | CAP477 |
E | LYS177 |
E | KCX201 |
E | ASP203 |
E | GLU204 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA H 476 |
Chain | Residue |
H | LYS177 |
H | KCX201 |
H | ASP203 |
H | GLU204 |
H | CAP477 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA K 476 |
Chain | Residue |
K | LYS177 |
K | KCX201 |
K | ASP203 |
K | GLU204 |
K | CAP477 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA L 476 |
Chain | Residue |
L | LYS177 |
L | KCX201 |
L | ASP203 |
L | GLU204 |
L | CAP477 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA O 476 |
Chain | Residue |
O | LYS177 |
O | KCX201 |
O | ASP203 |
O | GLU204 |
O | CAP477 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA R 476 |
Chain | Residue |
R | LYS177 |
R | KCX201 |
R | ASP203 |
R | GLU204 |
R | CAP477 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA V 476 |
Chain | Residue |
V | LYS177 |
V | KCX201 |
V | ASP203 |
V | GLU204 |
V | CAP477 |
site_id | AC9 |
Number of Residues | 26 |
Details | BINDING SITE FOR RESIDUE CAP B 477 |
Chain | Residue |
B | THR173 |
B | LYS175 |
B | LYS177 |
B | KCX201 |
B | HIS294 |
B | ARG295 |
B | HIS327 |
B | LYS334 |
B | LEU335 |
B | SER379 |
B | GLY380 |
B | GLY381 |
B | GLY403 |
B | GLY404 |
B | CA476 |
B | HOH2119 |
B | HOH2222 |
B | HOH2259 |
B | HOH2260 |
B | HOH2261 |
B | HOH2262 |
B | HOH2263 |
L | GLU60 |
L | THR65 |
L | TRP66 |
L | ASN123 |
site_id | BC1 |
Number of Residues | 27 |
Details | BINDING SITE FOR RESIDUE CAP E 477 |
Chain | Residue |
E | THR173 |
E | LYS175 |
E | LYS177 |
E | KCX201 |
E | GLU204 |
E | HIS294 |
E | ARG295 |
E | HIS327 |
E | LYS334 |
E | LEU335 |
E | SER379 |
E | GLY380 |
E | GLY381 |
E | GLY403 |
E | GLY404 |
E | CA476 |
E | HOH2110 |
E | HOH2180 |
E | HOH2226 |
E | HOH2228 |
E | HOH2295 |
E | HOH2296 |
E | HOH2297 |
H | GLU60 |
H | THR65 |
H | TRP66 |
H | ASN123 |
site_id | BC2 |
Number of Residues | 28 |
Details | BINDING SITE FOR RESIDUE CAP H 477 |
Chain | Residue |
H | LYS175 |
H | LYS177 |
H | KCX201 |
H | GLU204 |
H | HIS294 |
H | ARG295 |
H | HIS327 |
H | LYS334 |
H | LEU335 |
H | SER379 |
H | GLY380 |
H | GLY381 |
H | GLY403 |
H | GLY404 |
H | CA476 |
H | HOH2112 |
H | HOH2168 |
H | HOH2211 |
H | HOH2212 |
H | HOH2221 |
H | HOH2245 |
H | HOH2246 |
E | GLU60 |
E | THR65 |
E | TRP66 |
E | ASN123 |
E | HOH2040 |
H | THR173 |
site_id | BC3 |
Number of Residues | 26 |
Details | BINDING SITE FOR RESIDUE CAP K 477 |
Chain | Residue |
K | THR173 |
K | LYS175 |
K | LYS177 |
K | KCX201 |
K | HIS294 |
K | ARG295 |
K | HIS327 |
K | LYS334 |
K | LEU335 |
K | SER379 |
K | GLY380 |
K | GLY381 |
K | GLY403 |
K | GLY404 |
K | CA476 |
K | HOH2112 |
K | HOH2170 |
K | HOH2220 |
K | HOH2221 |
K | HOH2276 |
K | HOH2277 |
K | HOH2278 |
O | GLU60 |
O | THR65 |
O | TRP66 |
O | ASN123 |
site_id | BC4 |
Number of Residues | 26 |
Details | BINDING SITE FOR RESIDUE CAP L 477 |
Chain | Residue |
B | GLU60 |
B | THR65 |
B | TRP66 |
B | ASN123 |
L | THR173 |
L | LYS175 |
L | LYS177 |
L | KCX201 |
L | HIS294 |
L | ARG295 |
L | HIS327 |
L | LYS334 |
L | LEU335 |
L | SER379 |
L | GLY380 |
L | GLY381 |
L | GLY403 |
L | GLY404 |
L | CA476 |
L | HOH2123 |
L | HOH2185 |
L | HOH2188 |
L | HOH2305 |
L | HOH2306 |
L | HOH2307 |
L | HOH2308 |
site_id | BC5 |
Number of Residues | 27 |
Details | BINDING SITE FOR RESIDUE CAP O 477 |
Chain | Residue |
K | GLU60 |
K | THR65 |
K | TRP66 |
K | ASN123 |
O | THR173 |
O | LYS175 |
O | LYS177 |
O | KCX201 |
O | GLU204 |
O | HIS294 |
O | ARG295 |
O | HIS327 |
O | LYS334 |
O | LEU335 |
O | SER379 |
O | GLY380 |
O | GLY381 |
O | GLY403 |
O | GLY404 |
O | CA476 |
O | HOH2117 |
O | HOH2220 |
O | HOH2229 |
O | HOH2258 |
O | HOH2259 |
O | HOH2260 |
O | HOH2261 |
site_id | BC6 |
Number of Residues | 26 |
Details | BINDING SITE FOR RESIDUE CAP R 477 |
Chain | Residue |
R | THR173 |
R | LYS175 |
R | LYS177 |
R | KCX201 |
R | HIS294 |
R | ARG295 |
R | HIS327 |
R | LYS334 |
R | LEU335 |
R | SER379 |
R | GLY380 |
R | GLY381 |
R | GLY403 |
R | GLY404 |
R | CA476 |
R | HOH2115 |
R | HOH2177 |
R | HOH2179 |
R | HOH2227 |
R | HOH2289 |
R | HOH2290 |
V | GLU60 |
V | THR65 |
V | TRP66 |
V | ASN123 |
V | HOH2093 |
site_id | BC7 |
Number of Residues | 27 |
Details | BINDING SITE FOR RESIDUE CAP V 477 |
Chain | Residue |
R | GLU60 |
R | THR65 |
R | TRP66 |
R | ASN123 |
R | HOH2044 |
V | THR173 |
V | LYS175 |
V | LYS177 |
V | KCX201 |
V | HIS294 |
V | ARG295 |
V | HIS327 |
V | LYS334 |
V | LEU335 |
V | SER379 |
V | GLY380 |
V | GLY381 |
V | GLY403 |
V | GLY404 |
V | CA476 |
V | HOH2121 |
V | HOH2182 |
V | HOH2235 |
V | HOH2271 |
V | HOH2272 |
V | HOH2273 |
V | HOH2274 |
Functional Information from PROSITE/UniProt
site_id | PS00157 |
Number of Residues | 9 |
Details | RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE |
Chain | Residue | Details |
B | GLY196-GLU204 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 8 |
Details | ACT_SITE: Proton acceptor => ECO:0000269|PubMed:2118958, ECO:0000269|PubMed:637859, ECO:0000305|PubMed:9092835 |
Chain | Residue | Details |
B | LYS175 | |
E | LYS175 | |
H | LYS175 | |
K | LYS175 | |
L | LYS175 | |
O | LYS175 | |
R | LYS175 | |
V | LYS175 |
site_id | SWS_FT_FI2 |
Number of Residues | 8 |
Details | ACT_SITE: Proton acceptor => ECO:0000269|PubMed:637859 |
Chain | Residue | Details |
B | HIS294 | |
E | HIS294 | |
H | HIS294 | |
K | HIS294 | |
L | HIS294 | |
O | HIS294 | |
R | HIS294 | |
V | HIS294 |
site_id | SWS_FT_FI3 |
Number of Residues | 40 |
Details | BINDING: BINDING => ECO:0000269|PubMed:9034362, ECO:0007744|PDB:1RCX |
Chain | Residue | Details |
B | THR65 | |
E | LYS334 | |
H | THR65 | |
H | GLU204 | |
H | HIS294 | |
H | HIS327 | |
H | LYS334 | |
K | THR65 | |
K | GLU204 | |
K | HIS294 | |
K | HIS327 | |
B | GLU204 | |
K | LYS334 | |
L | THR65 | |
L | GLU204 | |
L | HIS294 | |
L | HIS327 | |
L | LYS334 | |
O | THR65 | |
O | GLU204 | |
O | HIS294 | |
O | HIS327 | |
B | HIS294 | |
O | LYS334 | |
R | THR65 | |
R | GLU204 | |
R | HIS294 | |
R | HIS327 | |
R | LYS334 | |
V | THR65 | |
V | GLU204 | |
V | HIS294 | |
V | HIS327 | |
B | HIS327 | |
V | LYS334 | |
B | LYS334 | |
E | THR65 | |
E | GLU204 | |
E | HIS294 | |
E | HIS327 |
site_id | SWS_FT_FI4 |
Number of Residues | 8 |
Details | BINDING: in homodimeric partner => ECO:0000269|PubMed:9034362, ECO:0007744|PDB:1RCX |
Chain | Residue | Details |
B | ASN123 | |
E | ASN123 | |
H | ASN123 | |
K | ASN123 | |
L | ASN123 | |
O | ASN123 | |
R | ASN123 | |
V | ASN123 |
site_id | SWS_FT_FI5 |
Number of Residues | 24 |
Details | BINDING: |
Chain | Residue | Details |
B | THR173 | |
K | THR173 | |
K | LYS177 | |
K | SER379 | |
L | THR173 | |
L | LYS177 | |
L | SER379 | |
O | THR173 | |
O | LYS177 | |
O | SER379 | |
R | THR173 | |
B | LYS177 | |
R | LYS177 | |
R | SER379 | |
V | THR173 | |
V | LYS177 | |
V | SER379 | |
B | SER379 | |
E | THR173 | |
E | LYS177 | |
E | SER379 | |
H | THR173 | |
H | LYS177 | |
H | SER379 |
site_id | SWS_FT_FI6 |
Number of Residues | 8 |
Details | BINDING: via carbamate group => ECO:0000269|PubMed:8648644, ECO:0000269|PubMed:9092835, ECO:0000305|PubMed:14596800, ECO:0000305|PubMed:2118958, ECO:0000305|PubMed:9034362 |
Chain | Residue | Details |
B | KCX201 | |
E | KCX201 | |
H | KCX201 | |
K | KCX201 | |
L | KCX201 | |
O | KCX201 | |
R | KCX201 | |
V | KCX201 |
site_id | SWS_FT_FI7 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0000269|PubMed:8648644, ECO:0000269|PubMed:9092835, ECO:0000305|PubMed:14596800, ECO:0000305|PubMed:2118958, ECO:0000305|PubMed:9034362 |
Chain | Residue | Details |
B | ASP203 | |
E | ASP203 | |
H | ASP203 | |
K | ASP203 | |
L | ASP203 | |
O | ASP203 | |
R | ASP203 | |
V | ASP203 |
site_id | SWS_FT_FI8 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0000269|PubMed:9034362, ECO:0007744|PDB:1RXO |
Chain | Residue | Details |
B | ARG295 | |
E | ARG295 | |
H | ARG295 | |
K | ARG295 | |
L | ARG295 | |
O | ARG295 | |
R | ARG295 | |
V | ARG295 |
site_id | SWS_FT_FI9 |
Number of Residues | 24 |
Details | BINDING: BINDING => ECO:0000269|PubMed:9034362, ECO:0007744|PDB:1RCX, ECO:0007744|PDB:1RXO |
Chain | Residue | Details |
B | GLY381 | |
K | GLY381 | |
K | GLY403 | |
K | GLY404 | |
L | GLY381 | |
L | GLY403 | |
L | GLY404 | |
O | GLY381 | |
O | GLY403 | |
O | GLY404 | |
R | GLY381 | |
B | GLY403 | |
R | GLY403 | |
R | GLY404 | |
V | GLY381 | |
V | GLY403 | |
V | GLY404 | |
B | GLY404 | |
E | GLY381 | |
E | GLY403 | |
E | GLY404 | |
H | GLY381 | |
H | GLY403 | |
H | GLY404 |
site_id | SWS_FT_FI10 |
Number of Residues | 8 |
Details | SITE: Not N6-methylated => ECO:0000269|PubMed:2928307 |
Chain | Residue | Details |
B | LYS14 | |
E | LYS14 | |
H | LYS14 | |
K | LYS14 | |
L | LYS14 | |
O | LYS14 | |
R | LYS14 | |
V | LYS14 |
site_id | SWS_FT_FI11 |
Number of Residues | 8 |
Details | SITE: Transition state stabilizer => ECO:0000305|PubMed:8955130 |
Chain | Residue | Details |
B | LYS334 | |
E | LYS334 | |
H | LYS334 | |
K | LYS334 | |
L | LYS334 | |
O | LYS334 | |
R | LYS334 | |
V | LYS334 |
site_id | SWS_FT_FI12 |
Number of Residues | 8 |
Details | MOD_RES: N-acetylproline => ECO:0000269|PubMed:2928307 |
Chain | Residue | Details |
B | PRO3 | |
E | PRO3 | |
H | PRO3 | |
K | PRO3 | |
L | PRO3 | |
O | PRO3 | |
R | PRO3 | |
V | PRO3 |
site_id | SWS_FT_FI13 |
Number of Residues | 8 |
Details | MOD_RES: N6-carboxylysine => ECO:0000269|PubMed:14596800, ECO:0000269|PubMed:2118958, ECO:0000269|PubMed:8648644, ECO:0000269|PubMed:9034362, ECO:0000269|PubMed:9092835 |
Chain | Residue | Details |
B | KCX201 | |
E | KCX201 | |
H | KCX201 | |
K | KCX201 | |
L | KCX201 | |
O | KCX201 | |
R | KCX201 | |
V | KCX201 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1rbl |
Chain | Residue | Details |
B | LYS175 | |
B | HIS294 | |
B | LYS177 | |
B | ASP203 | |
B | HIS327 |
site_id | CSA2 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1rbl |
Chain | Residue | Details |
E | LYS175 | |
E | HIS294 | |
E | LYS177 | |
E | ASP203 | |
E | HIS327 |
site_id | CSA3 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1rbl |
Chain | Residue | Details |
H | LYS175 | |
H | HIS294 | |
H | LYS177 | |
H | ASP203 | |
H | HIS327 |
site_id | CSA4 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1rbl |
Chain | Residue | Details |
K | LYS175 | |
K | HIS294 | |
K | LYS177 | |
K | ASP203 | |
K | HIS327 |
site_id | CSA5 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1rbl |
Chain | Residue | Details |
L | LYS175 | |
L | HIS294 | |
L | LYS177 | |
L | ASP203 | |
L | HIS327 |
site_id | CSA6 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1rbl |
Chain | Residue | Details |
O | LYS175 | |
O | HIS294 | |
O | LYS177 | |
O | ASP203 | |
O | HIS327 |
site_id | CSA7 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1rbl |
Chain | Residue | Details |
R | LYS175 | |
R | HIS294 | |
R | LYS177 | |
R | ASP203 | |
R | HIS327 |
site_id | CSA8 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1rbl |
Chain | Residue | Details |
V | LYS175 | |
V | HIS294 | |
V | LYS177 | |
V | ASP203 | |
V | HIS327 |