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1TK0

T7 DNA polymerase ternary complex with 8 oxo guanosine and ddCTP at the insertion site

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0004527molecular_functionexonuclease activity
A0004529molecular_functionDNA exonuclease activity
A0005515molecular_functionprotein binding
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0008408molecular_function3'-5' exonuclease activity
A0039693biological_processviral DNA genome replication
A0046872molecular_functionmetal ion binding
A0090592biological_processDNA synthesis involved in DNA replication
A0097681biological_processdouble-strand break repair via alternative nonhomologous end joining
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0015035molecular_functionprotein-disulfide reductase activity
B0015036molecular_functiondisulfide oxidoreductase activity
B0030337molecular_functionDNA polymerase processivity factor activity
B0045454biological_processcell redox homeostasis
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 991
ChainResidue
AASP475
AALA476
AASP654
ADCT823
AMG992

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 992
ChainResidue
AHOH1333
AHOH1618
PDDG822
AASP475
AASP654
ADCT823
AMG991

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 993
ChainResidue
AASP5
AHOH1054
AHOH1113
AHOH1620
AHOH1621
AHOH1622

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 994
ChainResidue
ALYS226
AARG229
AHOH1063
AHOH1303
AHOH1311
AHOH1362
AHOH1385

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 995
ChainResidue
ALYS184
AARG661
AHOH1043
AHOH1051
AHOH1593

site_idAC6
Number of Residues18
DetailsBINDING SITE FOR RESIDUE DCT A 823
ChainResidue
AARG429
AASP475
AALA476
ASER477
AGLY478
ALEU479
AGLU480
AHIS506
AARG518
ALYS522
ATYR526
AASP654
AMG991
AMG992
AHOH1078
AHOH1249
PDDG822
T8OG854

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE 1PE A 901
ChainResidue
AALA10
ATYR64
AMET107
ALYS136
ATRP160

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MES A 902
ChainResidue
ALEU77
AARG79
AHOH1341
BILE5
BSER11
BTHR14
BASP15
BHOH1239

Functional Information from PROSITE/UniProt
site_idPS00194
Number of Residues19
DetailsTHIOREDOXIN_1 Thioredoxin family active site. LVdFWaeWCGPCKmIapiL
ChainResidueDetails
BLEU24-LEU42

site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RdnAKtfiYGflYgaGdekI
ChainResidueDetails
AARG518-ILE537

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile
ChainResidueDetails
BGLY33
BLYS36
AALA180

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Deprotonates C-terminal active site Cys
ChainResidueDetails
BPHE27
AARG482
ACYS660

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Contributes to redox potential value
ChainResidueDetails
BPRO34
BCYS35
APHE528
AALA532

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:18723842
ChainResidueDetails
BTYR70

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1mek
ChainResidueDetails
BPRO34
BCYS35
BCYS32
BGLY33

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1mek
ChainResidueDetails
BCYS35
BCYS32

219140

PDB entries from 2024-05-01

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