1TG6
Crystallography and mutagenesis point to an essential role for the N-terminus of human mitochondrial ClpP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004175 | molecular_function | endopeptidase activity |
A | 0004176 | molecular_function | ATP-dependent peptidase activity |
A | 0004252 | molecular_function | serine-type endopeptidase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005739 | cellular_component | mitochondrion |
A | 0005759 | cellular_component | mitochondrial matrix |
A | 0006508 | biological_process | proteolysis |
A | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
A | 0008233 | molecular_function | peptidase activity |
A | 0008236 | molecular_function | serine-type peptidase activity |
A | 0009368 | cellular_component | endopeptidase Clp complex |
A | 0033619 | biological_process | membrane protein proteolysis |
A | 0035694 | biological_process | mitochondrial protein catabolic process |
A | 0042802 | molecular_function | identical protein binding |
A | 0051117 | molecular_function | ATPase binding |
A | 0051603 | biological_process | proteolysis involved in protein catabolic process |
B | 0004175 | molecular_function | endopeptidase activity |
B | 0004176 | molecular_function | ATP-dependent peptidase activity |
B | 0004252 | molecular_function | serine-type endopeptidase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005739 | cellular_component | mitochondrion |
B | 0005759 | cellular_component | mitochondrial matrix |
B | 0006508 | biological_process | proteolysis |
B | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
B | 0008233 | molecular_function | peptidase activity |
B | 0008236 | molecular_function | serine-type peptidase activity |
B | 0009368 | cellular_component | endopeptidase Clp complex |
B | 0033619 | biological_process | membrane protein proteolysis |
B | 0035694 | biological_process | mitochondrial protein catabolic process |
B | 0042802 | molecular_function | identical protein binding |
B | 0051117 | molecular_function | ATPase binding |
B | 0051603 | biological_process | proteolysis involved in protein catabolic process |
C | 0004175 | molecular_function | endopeptidase activity |
C | 0004176 | molecular_function | ATP-dependent peptidase activity |
C | 0004252 | molecular_function | serine-type endopeptidase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005739 | cellular_component | mitochondrion |
C | 0005759 | cellular_component | mitochondrial matrix |
C | 0006508 | biological_process | proteolysis |
C | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
C | 0008233 | molecular_function | peptidase activity |
C | 0008236 | molecular_function | serine-type peptidase activity |
C | 0009368 | cellular_component | endopeptidase Clp complex |
C | 0033619 | biological_process | membrane protein proteolysis |
C | 0035694 | biological_process | mitochondrial protein catabolic process |
C | 0042802 | molecular_function | identical protein binding |
C | 0051117 | molecular_function | ATPase binding |
C | 0051603 | biological_process | proteolysis involved in protein catabolic process |
D | 0004175 | molecular_function | endopeptidase activity |
D | 0004176 | molecular_function | ATP-dependent peptidase activity |
D | 0004252 | molecular_function | serine-type endopeptidase activity |
D | 0005515 | molecular_function | protein binding |
D | 0005739 | cellular_component | mitochondrion |
D | 0005759 | cellular_component | mitochondrial matrix |
D | 0006508 | biological_process | proteolysis |
D | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
D | 0008233 | molecular_function | peptidase activity |
D | 0008236 | molecular_function | serine-type peptidase activity |
D | 0009368 | cellular_component | endopeptidase Clp complex |
D | 0033619 | biological_process | membrane protein proteolysis |
D | 0035694 | biological_process | mitochondrial protein catabolic process |
D | 0042802 | molecular_function | identical protein binding |
D | 0051117 | molecular_function | ATPase binding |
D | 0051603 | biological_process | proteolysis involved in protein catabolic process |
E | 0004175 | molecular_function | endopeptidase activity |
E | 0004176 | molecular_function | ATP-dependent peptidase activity |
E | 0004252 | molecular_function | serine-type endopeptidase activity |
E | 0005515 | molecular_function | protein binding |
E | 0005739 | cellular_component | mitochondrion |
E | 0005759 | cellular_component | mitochondrial matrix |
E | 0006508 | biological_process | proteolysis |
E | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
E | 0008233 | molecular_function | peptidase activity |
E | 0008236 | molecular_function | serine-type peptidase activity |
E | 0009368 | cellular_component | endopeptidase Clp complex |
E | 0033619 | biological_process | membrane protein proteolysis |
E | 0035694 | biological_process | mitochondrial protein catabolic process |
E | 0042802 | molecular_function | identical protein binding |
E | 0051117 | molecular_function | ATPase binding |
E | 0051603 | biological_process | proteolysis involved in protein catabolic process |
F | 0004175 | molecular_function | endopeptidase activity |
F | 0004176 | molecular_function | ATP-dependent peptidase activity |
F | 0004252 | molecular_function | serine-type endopeptidase activity |
F | 0005515 | molecular_function | protein binding |
F | 0005739 | cellular_component | mitochondrion |
F | 0005759 | cellular_component | mitochondrial matrix |
F | 0006508 | biological_process | proteolysis |
F | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
F | 0008233 | molecular_function | peptidase activity |
F | 0008236 | molecular_function | serine-type peptidase activity |
F | 0009368 | cellular_component | endopeptidase Clp complex |
F | 0033619 | biological_process | membrane protein proteolysis |
F | 0035694 | biological_process | mitochondrial protein catabolic process |
F | 0042802 | molecular_function | identical protein binding |
F | 0051117 | molecular_function | ATPase binding |
F | 0051603 | biological_process | proteolysis involved in protein catabolic process |
G | 0004175 | molecular_function | endopeptidase activity |
G | 0004176 | molecular_function | ATP-dependent peptidase activity |
G | 0004252 | molecular_function | serine-type endopeptidase activity |
G | 0005515 | molecular_function | protein binding |
G | 0005739 | cellular_component | mitochondrion |
G | 0005759 | cellular_component | mitochondrial matrix |
G | 0006508 | biological_process | proteolysis |
G | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
G | 0008233 | molecular_function | peptidase activity |
G | 0008236 | molecular_function | serine-type peptidase activity |
G | 0009368 | cellular_component | endopeptidase Clp complex |
G | 0033619 | biological_process | membrane protein proteolysis |
G | 0035694 | biological_process | mitochondrial protein catabolic process |
G | 0042802 | molecular_function | identical protein binding |
G | 0051117 | molecular_function | ATPase binding |
G | 0051603 | biological_process | proteolysis involved in protein catabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE DIO A 800 |
Chain | Residue |
A | TYR62 |
A | VAL92 |
A | LEU114 |
G | LEU48 |
G | THR79 |
G | TYR82 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE DIO B 801 |
Chain | Residue |
C | TRP90 |
C | VAL92 |
C | LEU114 |
B | LEU48 |
B | TYR82 |
C | TYR62 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE DIO D 802 |
Chain | Residue |
C | LEU48 |
D | TYR62 |
D | TRP90 |
D | LEU114 |
site_id | AC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE DIO E 803 |
Chain | Residue |
D | SER41 |
D | HOH1144 |
D | HOH1224 |
E | CYS30 |
E | MET32 |
E | TYR62 |
E | ASN64 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE DIO F 804 |
Chain | Residue |
E | LEU48 |
F | TYR62 |
F | TRP90 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE DIO G 805 |
Chain | Residue |
F | LEU48 |
F | TYR82 |
G | TYR62 |
G | TRP90 |
G | VAL92 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 900 |
Chain | Residue |
A | CYS30 |
A | MET32 |
A | TYR62 |
A | HOH928 |
G | SER41 |
site_id | AC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO B 901 |
Chain | Residue |
A | SER41 |
B | MET32 |
site_id | AC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO B 902 |
Chain | Residue |
A | TYR82 |
B | TYR62 |
B | TRP90 |
site_id | BC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO C 903 |
Chain | Residue |
B | SER41 |
B | HOH1061 |
C | CYS30 |
C | MET32 |
site_id | BC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO C 904 |
Chain | Residue |
C | SER41 |
D | CYS30 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO D 905 |
Chain | Residue |
D | TYR82 |
E | TYR62 |
E | TRP90 |
E | VAL92 |
site_id | BC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO F 906 |
Chain | Residue |
E | HOH1091 |
F | CYS30 |
F | TYR62 |
site_id | BC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO G 907 |
Chain | Residue |
G | HIS60 |
G | TYR62 |
site_id | BC6 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE FME D 1100 |
Chain | Residue |
A | PRO66 |
A | GLY67 |
A | GLY68 |
A | VAL70 |
A | SER97 |
A | MET98 |
A | HIS122 |
A | GLN123 |
A | PRO124 |
A | LEU149 |
D | HOH1153 |
site_id | BC7 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE FME D 1101 |
Chain | Residue |
B | GLY67 |
B | GLY68 |
B | VAL70 |
B | SER97 |
B | MET98 |
B | HIS122 |
B | GLN123 |
B | PRO124 |
B | LEU149 |
D | HOH1229 |
site_id | BC8 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE FME D 1102 |
Chain | Residue |
C | GLY67 |
C | GLY68 |
C | VAL70 |
C | SER97 |
C | MET98 |
C | HIS122 |
C | GLN123 |
C | PRO124 |
C | LEU149 |
D | HOH1117 |
site_id | BC9 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE FME D 1103 |
Chain | Residue |
D | GLY67 |
D | GLY68 |
D | VAL70 |
D | SER97 |
D | MET98 |
D | HIS122 |
D | GLN123 |
D | PRO124 |
D | LEU149 |
D | HOH1205 |
D | HOH1208 |
site_id | CC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE FME D 1104 |
Chain | Residue |
E | GLY68 |
E | VAL70 |
E | SER97 |
E | MET98 |
E | HIS122 |
E | PRO124 |
E | LEU149 |
E | GLY67 |
site_id | CC2 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE FME D 1105 |
Chain | Residue |
D | HOH1107 |
F | PRO66 |
F | GLY68 |
F | SER97 |
F | MET98 |
F | HIS122 |
F | PRO124 |
F | HOH1060 |
F | HOH1122 |
site_id | CC3 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE FME D 1106 |
Chain | Residue |
D | HOH1137 |
G | GLY67 |
G | GLY68 |
G | VAL70 |
G | SER97 |
G | MET98 |
G | HIS122 |
G | PRO124 |
G | LEU149 |
G | HOH1008 |
site_id | CC4 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL B 1000 |
Chain | Residue |
A | GLU141 |
A | LEU145 |
A | HOH931 |
B | ARG118 |
B | TYR173 |
B | MET174 |
B | SER175 |
B | HOH1013 |
B | HOH1021 |
B | HOH1024 |
site_id | CC5 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL B 1001 |
Chain | Residue |
B | GLU141 |
B | LEU145 |
B | HOH1020 |
B | HOH1023 |
B | HOH1029 |
C | ARG118 |
C | TYR173 |
C | MET174 |
C | SER175 |
C | HOH1027 |
site_id | CC6 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL C 1002 |
Chain | Residue |
C | GLU141 |
C | LEU145 |
C | HOH1047 |
C | HOH1059 |
C | HOH1066 |
D | ARG118 |
D | TYR173 |
D | MET174 |
D | SER175 |
D | HOH1140 |
site_id | CC7 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL D 1003 |
Chain | Residue |
D | GLU141 |
D | LYS144 |
D | HOH1113 |
D | HOH1131 |
D | HOH1133 |
D | HOH1162 |
D | HOH1219 |
E | ARG118 |
E | TYR173 |
E | SER175 |
site_id | CC8 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL E 1004 |
Chain | Residue |
E | GLU141 |
E | LEU145 |
E | HOH1043 |
E | HOH1090 |
F | ARG118 |
F | TYR173 |
F | MET174 |
F | SER175 |
F | HOH1056 |
F | HOH1065 |
site_id | CC9 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL F 1005 |
Chain | Residue |
F | GLU141 |
F | LYS144 |
F | HOH1082 |
G | ARG118 |
G | TYR173 |
G | SER175 |
G | HOH959 |
G | HOH971 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 7 |
Details | ACT_SITE: Nucleophile => ECO:0000269|PubMed:11923310 |
Chain | Residue | Details |
A | SER97 | |
B | SER97 | |
C | SER97 | |
D | SER97 | |
E | SER97 | |
F | SER97 | |
G | SER97 |
site_id | SWS_FT_FI2 |
Number of Residues | 7 |
Details | ACT_SITE: ACT_SITE => ECO:0000250 |
Chain | Residue | Details |
A | HIS122 | |
B | HIS122 | |
C | HIS122 | |
D | HIS122 | |
E | HIS122 | |
F | HIS122 | |
G | HIS122 |
site_id | SWS_FT_FI3 |
Number of Residues | 7 |
Details | MOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:O88696 |
Chain | Residue | Details |
A | LYS144 | |
B | LYS144 | |
C | LYS144 | |
D | LYS144 | |
E | LYS144 | |
F | LYS144 | |
G | LYS144 |
site_id | SWS_FT_FI4 |
Number of Residues | 7 |
Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
A | LYS155 | |
B | LYS155 | |
C | LYS155 | |
D | LYS155 | |
E | LYS155 | |
F | LYS155 | |
G | LYS155 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1tyf |
Chain | Residue | Details |
A | MET98 | |
A | SER97 | |
A | GLY68 | |
A | HIS122 | |
A | ASP171 |
site_id | CSA2 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1tyf |
Chain | Residue | Details |
B | MET98 | |
B | SER97 | |
B | GLY68 | |
B | HIS122 | |
B | ASP171 |
site_id | CSA3 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1tyf |
Chain | Residue | Details |
C | MET98 | |
C | SER97 | |
C | GLY68 | |
C | HIS122 | |
C | ASP171 |
site_id | CSA4 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1tyf |
Chain | Residue | Details |
D | MET98 | |
D | SER97 | |
D | GLY68 | |
D | HIS122 | |
D | ASP171 |
site_id | CSA5 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1tyf |
Chain | Residue | Details |
E | MET98 | |
E | SER97 | |
E | GLY68 | |
E | HIS122 | |
E | ASP171 |
site_id | CSA6 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1tyf |
Chain | Residue | Details |
F | MET98 | |
F | SER97 | |
F | GLY68 | |
F | HIS122 | |
F | ASP171 |
site_id | CSA7 |
Number of Residues | 5 |
Details | Annotated By Reference To The Literature 1tyf |
Chain | Residue | Details |
G | MET98 | |
G | SER97 | |
G | GLY68 | |
G | HIS122 | |
G | ASP171 |