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1TB7

Catalytic Domain Of Human Phosphodiesterase 4D In Complex With AMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ZN A 1001
ChainResidue
AHIS164
AHIS200
AASP201
AASP318
AMG1002
AAMP1003
AHOH1190

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 1002
ChainResidue
AAMP1003
AHOH1187
AHOH1188
AHOH1189
AHOH1190
AASP201
AZN1001

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ZN B 1001
ChainResidue
BHIS164
BHIS200
BASP201
BASP318
BMG1002
BAMP1003
BHOH1175

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 1002
ChainResidue
BASP201
BZN1001
BAMP1003
BHOH1172
BHOH1173
BHOH1174
BHOH1175

site_idAC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE AMP B 1003
ChainResidue
BHIS160
BHIS164
BASP201
BASP318
BLEU319
BASN321
BGLN369
BPHE372
BEDO543
BZN1001
BMG1002
BHOH1004
BHOH1027
BHOH1104
BHOH1174
BHOH1175

site_idAC6
Number of Residues18
DetailsBINDING SITE FOR RESIDUE AMP A 1003
ChainResidue
AHIS160
AHIS164
AASP201
AASP318
ALEU319
AASN321
AGLN369
APHE372
AEDO523
AZN1001
AMG1002
AHOH1005
AHOH1053
AHOH1057
AHOH1105
AHOH1187
AHOH1189
AHOH1190

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 501
ChainResidue
BGLU366
BEDO503

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 502
ChainResidue
ALYS262
AILE265
AASP266
AHOH1021

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 503
ChainResidue
BARG330
BTHR333
BASP334
BTYR406
BEDO501
BHOH1165

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 508
ChainResidue
BSER208
BPHE340
BPRO356
BHOH1059

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 509
ChainResidue
BSER259
BHOH1056

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 515
ChainResidue
AASN115
AALA155
AASN162
AHOH1064
AHOH1103

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 516
ChainResidue
ATHR178
ATRP384
AVAL388
AASP391
AALA392
AILE395

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 517
ChainResidue
BPHE238
BARG257
BARG261
BHOH1084
BHOH1093

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 519
ChainResidue
AALA183
AVAL184
APHE185

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 520
ChainResidue
AARG257
AARG261
AHOH1146

site_idBC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 521
ChainResidue
AHIS160
AGLY206
AVAL207
ASER208
AGLU339
APHE340
AGLN343
AEDO522
AHOH1057

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 522
ChainResidue
ASER208
APRO356
ACYS358
AEDO521

site_idCC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EDO A 523
ChainResidue
AASN209
ALEU229
AGLU230
AASP272
AMET273
AAMP1003
AHOH1053
AHOH1056
AHOH1137
AHOH1187

site_idCC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 524
ChainResidue
AHOH1032
BGLU218

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 525
ChainResidue
AASN224
BLYS262
BILE265
BASP266
BHOH1011
BHOH1087

site_idCC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 526
ChainResidue
AGLN407
BGLU150
BASP151
BTYR153
BASN162
BEDO534
BHOH1075

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 533
ChainResidue
AHIS154
AASP203
APRO205
ALEU219

site_idCC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 534
ChainResidue
BASN115
BALA155
BASN162
BILE163
BEDO526
BHOH1075
BHOH1164

site_idCC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 535
ChainResidue
BASN209
BGLU230
BMET273
BEDO543
BHOH1027

site_idCC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 536
ChainResidue
AARG330
AGLU366
ATRP405
ATYR406
AHOH1088
BPRO411

site_idCC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 537
ChainResidue
APRO325
AGLN327
AHOH1055
BTRP405
BHOH1076

site_idDC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 538
ChainResidue
ATHR186
ALEU188
AGLU189
ASER259
AMET263
AHOH1120

site_idDC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 539
ChainResidue
AARG116
AMET147
ATHR148
AASP151

site_idDC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 540
ChainResidue
AASP334
AMET337
AGLU338
APHE341
AHOH1111

site_idDC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 541
ChainResidue
BASP266
BILE307
BGLN311
BEDO542
BHOH1106

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 542
ChainResidue
BASP266
BLEU269
BLYS275
BGLN311
BEDO541

site_idDC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EDO B 543
ChainResidue
BHIS160
BHIS204
BGLY206
BVAL207
BSER208
BGLU339
BEDO535
BAMP1003
BHOH1027
BHOH1059

site_idDC7
Number of Residues11
DetailsBINDING SITE FOR RESIDUE B3P A 601
ChainResidue
ALYS94
AGLU95
AGLU97
AASP98
AHIS105
AARG108
AHOH1147
BASP394
BASP397
BASP401
BHOH1123

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDVdHpGvsNqF
ChainResidueDetails
AHIS200-PHE211

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000250|UniProtKB:Q07343
ChainResidueDetails
AHIS160
BHIS160

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7
ChainResidueDetails
AGLN369
BHIS160
BASN321
BGLN369
AHIS160
AASN321

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:2PW3
ChainResidueDetails
AHIS164
BHIS164

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:1XOR, ECO:0007744|PDB:2PW3
ChainResidueDetails
BHIS200
BASP318
AHIS200
AASP318

site_idSWS_FT_FI5
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0007744|PDB:1PTW
ChainResidueDetails
AASP201
APHE372
BASP201
BPHE372

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PDB entries from 2024-06-12

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