1T7P
T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXIN
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003677 | molecular_function | DNA binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0004518 | molecular_function | nuclease activity |
A | 0004527 | molecular_function | exonuclease activity |
A | 0004529 | molecular_function | DNA exonuclease activity |
A | 0005515 | molecular_function | protein binding |
A | 0006260 | biological_process | DNA replication |
A | 0006261 | biological_process | DNA-templated DNA replication |
A | 0008152 | biological_process | metabolic process |
A | 0008408 | molecular_function | 3'-5' exonuclease activity |
A | 0016740 | molecular_function | transferase activity |
A | 0016779 | molecular_function | nucleotidyltransferase activity |
A | 0016787 | molecular_function | hydrolase activity |
A | 0039693 | biological_process | viral DNA genome replication |
A | 0046872 | molecular_function | metal ion binding |
A | 0090592 | biological_process | DNA synthesis involved in DNA replication |
A | 0097681 | biological_process | double-strand break repair via alternative nonhomologous end joining |
B | 0005515 | molecular_function | protein binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0015035 | molecular_function | protein-disulfide reductase activity |
B | 0015036 | molecular_function | disulfide oxidoreductase activity |
B | 0030337 | molecular_function | DNA polymerase processivity factor activity |
B | 0045454 | biological_process | cell redox homeostasis |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG A 4001 |
Chain | Residue |
A | ASP475 |
A | ALA476 |
A | ASP654 |
P | DG323 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 4002 |
Chain | Residue |
P | HOH3180 |
A | ASP475 |
A | ASP654 |
A | HOH3195 |
P | 2DA22 |
P | DG323 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG A 4003 |
Chain | Residue |
A | ASP5 |
A | HOH3532 |
A | HOH3533 |
A | HOH3534 |
A | HOH3535 |
site_id | AC4 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE DG3 P 23 |
Chain | Residue |
A | ARG429 |
A | ASP475 |
A | ALA476 |
A | SER477 |
A | GLY478 |
A | LEU479 |
A | GLU480 |
A | HIS506 |
A | ARG518 |
A | LYS522 |
A | TYR526 |
A | TYR530 |
A | ASP654 |
A | HOH3486 |
A | MG4001 |
A | MG4002 |
P | 2DA22 |
P | HOH3107 |
P | HOH3405 |
T | DC4 |
T | DT5 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Nucleophile |
Chain | Residue | Details |
B | CYS32 | |
B | CYS35 | |
A | ALA180 |
site_id | SWS_FT_FI2 |
Number of Residues | 1 |
Details | SITE: Deprotonates C-terminal active site Cys |
Chain | Residue | Details |
B | ASP26 | |
A | ARG482 | |
A | CYS660 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | SITE: Contributes to redox potential value |
Chain | Residue | Details |
B | GLY33 | |
B | PRO34 | |
A | PHE528 | |
A | ALA532 |
site_id | SWS_FT_FI4 |
Number of Residues | 1 |
Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:18723842 |
Chain | Residue | Details |
B | LYS69 |