1SZZ
Crystal structure of peptide deformylase from Leptospira Interrogans complexed with inhibitor actinonin
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0006412 | biological_process | translation |
A | 0016787 | molecular_function | hydrolase activity |
A | 0042586 | molecular_function | peptide deformylase activity |
A | 0043686 | biological_process | co-translational protein modification |
A | 0046872 | molecular_function | metal ion binding |
B | 0006412 | biological_process | translation |
B | 0016787 | molecular_function | hydrolase activity |
B | 0042586 | molecular_function | peptide deformylase activity |
B | 0043686 | biological_process | co-translational protein modification |
B | 0046872 | molecular_function | metal ion binding |
C | 0006412 | biological_process | translation |
C | 0016787 | molecular_function | hydrolase activity |
C | 0042586 | molecular_function | peptide deformylase activity |
C | 0043686 | biological_process | co-translational protein modification |
C | 0046872 | molecular_function | metal ion binding |
D | 0006412 | biological_process | translation |
D | 0016787 | molecular_function | hydrolase activity |
D | 0042586 | molecular_function | peptide deformylase activity |
D | 0043686 | biological_process | co-translational protein modification |
D | 0046872 | molecular_function | metal ion binding |
E | 0006412 | biological_process | translation |
E | 0016787 | molecular_function | hydrolase activity |
E | 0042586 | molecular_function | peptide deformylase activity |
E | 0043686 | biological_process | co-translational protein modification |
E | 0046872 | molecular_function | metal ion binding |
F | 0006412 | biological_process | translation |
F | 0016787 | molecular_function | hydrolase activity |
F | 0042586 | molecular_function | peptide deformylase activity |
F | 0043686 | biological_process | co-translational protein modification |
F | 0046872 | molecular_function | metal ion binding |
G | 0006412 | biological_process | translation |
G | 0016787 | molecular_function | hydrolase activity |
G | 0042586 | molecular_function | peptide deformylase activity |
G | 0043686 | biological_process | co-translational protein modification |
G | 0046872 | molecular_function | metal ion binding |
H | 0006412 | biological_process | translation |
H | 0016787 | molecular_function | hydrolase activity |
H | 0042586 | molecular_function | peptide deformylase activity |
H | 0043686 | biological_process | co-translational protein modification |
H | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ZN A 716 |
Chain | Residue |
A | GLN53 |
A | CYS101 |
A | HIS143 |
A | HIS147 |
A | BB2513 |
site_id | AC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ZN B 717 |
Chain | Residue |
B | BB2514 |
B | GLN53 |
B | CYS101 |
B | HIS143 |
B | HIS147 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ZN C 718 |
Chain | Residue |
C | GLN53 |
C | CYS101 |
C | HIS143 |
C | HIS147 |
C | BB2515 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ZN D 719 |
Chain | Residue |
D | GLN53 |
D | CYS101 |
D | HIS143 |
D | HIS147 |
D | BB2516 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ZN E 720 |
Chain | Residue |
E | GLN53 |
E | CYS101 |
E | HIS143 |
E | HIS147 |
E | BB2517 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ZN F 721 |
Chain | Residue |
F | GLN53 |
F | CYS101 |
F | HIS143 |
F | HIS147 |
F | BB2518 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ZN G 722 |
Chain | Residue |
G | GLN53 |
G | CYS101 |
G | HIS143 |
G | HIS147 |
G | BB2519 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ZN H 723 |
Chain | Residue |
H | GLN53 |
H | CYS101 |
H | HIS143 |
H | HIS147 |
H | BB2520 |
site_id | AC9 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE BB2 A 513 |
Chain | Residue |
A | GLY46 |
A | VAL47 |
A | GLY48 |
A | GLN53 |
A | TRP98 |
A | GLY100 |
A | CYS101 |
A | LEU102 |
A | TYR136 |
A | ILE139 |
A | VAL140 |
A | HIS143 |
A | GLU144 |
A | HIS147 |
A | ZN716 |
site_id | BC1 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE BB2 B 514 |
Chain | Residue |
B | GLY46 |
B | VAL47 |
B | GLY48 |
B | GLN53 |
B | TYR71 |
B | PHE97 |
B | TRP98 |
B | GLY100 |
B | CYS101 |
B | LEU102 |
B | TYR136 |
B | ILE139 |
B | VAL140 |
B | HIS143 |
B | GLU144 |
B | HIS147 |
B | ZN717 |
site_id | BC2 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE BB2 C 515 |
Chain | Residue |
C | GLY46 |
C | VAL47 |
C | GLY48 |
C | GLN53 |
C | TYR71 |
C | TRP98 |
C | GLU99 |
C | GLY100 |
C | CYS101 |
C | LEU102 |
C | TYR136 |
C | ILE139 |
C | HIS143 |
C | GLU144 |
C | HIS147 |
C | ZN718 |
site_id | BC3 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE BB2 D 516 |
Chain | Residue |
D | TYR136 |
D | VAL140 |
D | HIS143 |
D | GLU144 |
D | HIS147 |
D | ZN719 |
D | GLY46 |
D | VAL47 |
D | GLY48 |
D | GLN53 |
D | GLU69 |
D | THR74 |
D | TRP98 |
D | GLU99 |
D | GLY100 |
D | CYS101 |
D | LEU102 |
site_id | BC4 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE BB2 E 517 |
Chain | Residue |
E | GLY46 |
E | VAL47 |
E | GLY48 |
E | GLN53 |
E | TRP98 |
E | GLU99 |
E | GLY100 |
E | CYS101 |
E | LEU102 |
E | ILE139 |
E | HIS143 |
E | GLU144 |
E | HIS147 |
E | ZN720 |
site_id | BC5 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE BB2 F 518 |
Chain | Residue |
F | GLY46 |
F | VAL47 |
F | GLY48 |
F | GLN53 |
F | TRP98 |
F | GLY100 |
F | CYS101 |
F | LEU102 |
F | TYR136 |
F | HIS143 |
F | GLU144 |
F | HIS147 |
F | ZN721 |
site_id | BC6 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE BB2 G 519 |
Chain | Residue |
G | VAL47 |
G | GLY48 |
G | GLN53 |
G | PHE97 |
G | TRP98 |
G | GLU99 |
G | GLY100 |
G | CYS101 |
G | LEU102 |
G | ILE139 |
G | VAL140 |
G | HIS143 |
G | GLU144 |
G | HIS147 |
G | ZN722 |
site_id | BC7 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE BB2 H 520 |
Chain | Residue |
H | GLY46 |
H | VAL47 |
H | GLY48 |
H | GLN53 |
H | TRP98 |
H | GLY100 |
H | CYS101 |
H | LEU102 |
H | ARG108 |
H | TYR136 |
H | VAL140 |
H | HIS143 |
H | GLU144 |
H | HIS147 |
H | ZN723 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 8 |
Details | ACT_SITE: ACT_SITE => ECO:0000250 |
Chain | Residue | Details |
A | GLU144 | |
B | GLU144 | |
C | GLU144 | |
D | GLU144 | |
E | GLU144 | |
F | GLU144 | |
G | GLU144 | |
H | GLU144 |
site_id | SWS_FT_FI2 |
Number of Residues | 24 |
Details | BINDING: BINDING => ECO:0000250 |
Chain | Residue | Details |
A | CYS101 | |
D | CYS101 | |
D | HIS143 | |
D | HIS147 | |
E | CYS101 | |
E | HIS143 | |
E | HIS147 | |
F | CYS101 | |
F | HIS143 | |
F | HIS147 | |
G | CYS101 | |
A | HIS143 | |
G | HIS143 | |
G | HIS147 | |
H | CYS101 | |
H | HIS143 | |
H | HIS147 | |
A | HIS147 | |
B | CYS101 | |
B | HIS143 | |
B | HIS147 | |
C | CYS101 | |
C | HIS143 | |
C | HIS147 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bs4 |
Chain | Residue | Details |
A | LEU102 | |
A | GLY48 | |
A | GLN53 | |
A | GLU144 |
site_id | CSA2 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bs4 |
Chain | Residue | Details |
B | LEU102 | |
B | GLY48 | |
B | GLN53 | |
B | GLU144 |
site_id | CSA3 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bs4 |
Chain | Residue | Details |
C | LEU102 | |
C | GLY48 | |
C | GLN53 | |
C | GLU144 |
site_id | CSA4 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bs4 |
Chain | Residue | Details |
D | LEU102 | |
D | GLY48 | |
D | GLN53 | |
D | GLU144 |
site_id | CSA5 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bs4 |
Chain | Residue | Details |
E | LEU102 | |
E | GLY48 | |
E | GLN53 | |
E | GLU144 |
site_id | CSA6 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bs4 |
Chain | Residue | Details |
F | LEU102 | |
F | GLY48 | |
F | GLN53 | |
F | GLU144 |
site_id | CSA7 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bs4 |
Chain | Residue | Details |
G | LEU102 | |
G | GLY48 | |
G | GLN53 | |
G | GLU144 |
site_id | CSA8 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1bs4 |
Chain | Residue | Details |
H | LEU102 | |
H | GLY48 | |
H | GLN53 | |
H | GLU144 |