Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1S8F

Crystal structure of Rab9 complexed to GDP reveals a dimer with an active conformation of switch II

Functional Information from GO Data
ChainGOidnamespacecontents
A0003924molecular_functionGTPase activity
A0005525molecular_functionGTP binding
A0032482biological_processRab protein signal transduction
B0003924molecular_functionGTPase activity
B0005525molecular_functionGTP binding
B0032482biological_processRab protein signal transduction
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SR A 2401
ChainResidue
ASER1021
ABEZ1502
AGDP3400
AHOH9005
AHOH9009
AHOH9024

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 5401
ChainResidue
BHOH9015
BHOH9019
BHOH9033
BSER4021
BGDP6400
BHOH9007

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SR B 2001
ChainResidue
BPHE4069
BPHE4069
BARG4070
BARG4070
BSER4071
BSER4071

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 3001
ChainResidue
BARG4070
BARG4073
BTHR4074
BHOH9011
BHOH9069

site_idAC5
Number of Residues23
DetailsBINDING SITE FOR RESIDUE GDP A 3400
ChainResidue
AGLY1017
AVAL1018
AGLY1019
ALYS1020
ASER1021
ASER1022
APHE1032
AASN1124
ALYS1125
AASP1127
AILE1128
ASER1154
AALA1155
ALYS1156
ABEZ1502
ASR2401
AHOH9009
AHOH9024
AHOH9026
AHOH9081
AHOH9085
AHOH9152
AHOH9224

site_idAC6
Number of Residues21
DetailsBINDING SITE FOR RESIDUE GDP B 6400
ChainResidue
BGLY4017
BVAL4018
BGLY4019
BLYS4020
BSER4021
BSER4022
BPHE4032
BASN4124
BLYS4125
BASP4127
BSER4154
BALA4155
BLYS4156
BMG5401
BHOH9007
BHOH9019
BHOH9033
BHOH9095
BHOH9145
BHOH9150
BHOH9219

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BEZ A 1500
ChainResidue
AARG1068
APHE1069
AARG1070
ASER1071
ALEU1072
ABEZ1501
AHOH9103
BSER4071
BHOH9043

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BEZ A 1501
ChainResidue
APHE1055
AARG1068
ABEZ1500
AHOH9023
AHOH9048
AHOH9116
BPRO4075
BHOH9017

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BEZ A 1502
ChainResidue
AHIS1038
ATHR1039
AGLN1066
ASR2401
AGDP3400
AHOH9009
AHOH9010
AHOH9024
AHOH9054

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE BEZ B 1503
ChainResidue
BHOH9110
BTHR4063
BGLU4067
BARG4068
BPHE4069
BARG4070
BARG4073

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues30
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P51151
ChainResidueDetails
AGLY1017
AASP1062
AGLY1065
AASN1124
ALYS1125
AASP1127
ALYS1156
BGLY4017
BVAL4018
BGLY4019
BLYS4020
AVAL1018
BSER4021
BSER4022
BTHR4034
BHIS4038
BTHR4039
BASP4062
BGLY4065
BASN4124
BLYS4125
BASP4127
AGLY1019
BLYS4156
ALYS1020
ASER1021
ASER1022
ATHR1034
AHIS1038
ATHR1039

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:15196914, ECO:0007744|PDB:1S8F
ChainResidueDetails
AALA1155
BALA4155

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N-acetylalanine => ECO:0000250|UniProtKB:P51151
ChainResidueDetails
AALA1002
BALA4002

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
AGLN1066

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
BGLN4066

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
AGLY1017

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
BGLY4017

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon