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1S8F

Crystal structure of Rab9 complexed to GDP reveals a dimer with an active conformation of switch II

Functional Information from GO Data
ChainGOidnamespacecontents
A0003924molecular_functionGTPase activity
A0005525molecular_functionGTP binding
A0032482biological_processRab protein signal transduction
B0003924molecular_functionGTPase activity
B0005525molecular_functionGTP binding
B0032482biological_processRab protein signal transduction
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SR A 2401
ChainResidue
ASER1021
ABEZ1502
AGDP3400
AHOH9005
AHOH9009
AHOH9024

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 5401
ChainResidue
BHOH9015
BHOH9019
BHOH9033
BSER4021
BGDP6400
BHOH9007

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SR B 2001
ChainResidue
BPHE4069
BPHE4069
BARG4070
BARG4070
BSER4071
BSER4071

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 3001
ChainResidue
BARG4070
BARG4073
BTHR4074
BHOH9011
BHOH9069

site_idAC5
Number of Residues23
DetailsBINDING SITE FOR RESIDUE GDP A 3400
ChainResidue
AGLY1017
AVAL1018
AGLY1019
ALYS1020
ASER1021
ASER1022
APHE1032
AASN1124
ALYS1125
AASP1127
AILE1128
ASER1154
AALA1155
ALYS1156
ABEZ1502
ASR2401
AHOH9009
AHOH9024
AHOH9026
AHOH9081
AHOH9085
AHOH9152
AHOH9224

site_idAC6
Number of Residues21
DetailsBINDING SITE FOR RESIDUE GDP B 6400
ChainResidue
BGLY4017
BVAL4018
BGLY4019
BLYS4020
BSER4021
BSER4022
BPHE4032
BASN4124
BLYS4125
BASP4127
BSER4154
BALA4155
BLYS4156
BMG5401
BHOH9007
BHOH9019
BHOH9033
BHOH9095
BHOH9145
BHOH9150
BHOH9219

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BEZ A 1500
ChainResidue
AARG1068
APHE1069
AARG1070
ASER1071
ALEU1072
ABEZ1501
AHOH9103
BSER4071
BHOH9043

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BEZ A 1501
ChainResidue
APHE1055
AARG1068
ABEZ1500
AHOH9023
AHOH9048
AHOH9116
BPRO4075
BHOH9017

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BEZ A 1502
ChainResidue
AHIS1038
ATHR1039
AGLN1066
ASR2401
AGDP3400
AHOH9009
AHOH9010
AHOH9024
AHOH9054

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE BEZ B 1503
ChainResidue
BHOH9110
BTHR4063
BGLU4067
BARG4068
BPHE4069
BARG4070
BARG4073

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000305|PubMed:15196914, ECO:0007744|PDB:1S8F
ChainResidueDetails
AGLY1014
AASN1124
AALA1155
BGLY4014
BASN4124
BALA4155

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP1062
BASP4062

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N-acetylalanine => ECO:0000250|UniProtKB:P51151
ChainResidueDetails
AALA1002
BALA4002

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
AGLN1066

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
BGLN4066

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
AGLY1017

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ksj
ChainResidueDetails
BGLY4017

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PDB entries from 2024-05-01

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