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1S68

Structure and Mechanism of RNA Ligase

Functional Information from GO Data
ChainGOidnamespacecontents
A0003972molecular_functionRNA ligase (ATP) activity
A0005524molecular_functionATP binding
A0016874molecular_functionligase activity
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE AMP A 301
ChainResidue
ATYR5
AVAL207
ALYS225
ALYS227
AHOH317
AHOH355
AGLU34
ALYS35
AILE36
AASN40
AARG55
AGLU99
APHE119
AALA150

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: N6-AMP-lysine intermediate => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:17018278
ChainResidueDetails
ALYS35

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:14962393, ECO:0000269|PubMed:17018278
ChainResidueDetails
AASN40
AGLU99
ALYS225
ALYS227
AGLU34
AILE36

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:14962393, ECO:0000269|PubMed:17018278
ChainResidueDetails
ALYS35

site_idSWS_FT_FI4
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:14962393
ChainResidueDetails
AARG55

site_idSWS_FT_FI5
Number of Residues5
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_04150, ECO:0000269|PubMed:17018278
ChainResidueDetails
ATYR206
AGLU204
AILE162
ALEU164
AASN166

site_idSWS_FT_FI6
Number of Residues1
DetailsSITE: Interaction with RNA => ECO:0000255|HAMAP-Rule:MF_04150
ChainResidueDetails
AASN218

218500

PDB entries from 2024-04-17

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