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1S0O

Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0009432biological_processSOS response
A0016740molecular_functiontransferase activity
A0016779molecular_functionnucleotidyltransferase activity
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0009432biological_processSOS response
B0016740molecular_functiontransferase activity
B0016779molecular_functionnucleotidyltransferase activity
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 401
ChainResidue
AASP7
AASP105
AGLU106
ACA402
ATTP803
AHOH893
AHOH943

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 402
ChainResidue
AASP105
ACA401
ATTP803
AHOH813
AASP7
APHE8

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE CA B 403
ChainResidue
BASP7
BASP105
BGLU106
BCA404
BTTP804
BHOH806
BHOH865
BHOH927

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA B 404
ChainResidue
BASP7
BPHE8
BASP105
BCA403
BTTP804
BHOH890
BHOH927

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA B 405
ChainResidue
BALA181
BILE186
EHOH124

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CA A 406
ChainResidue
AALA181
AILE186

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 407
ChainResidue
AASP294
AHOH891

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG B 408
ChainResidue
BASP294
BHOH880
BHOH932

site_idAC9
Number of Residues24
DetailsBINDING SITE FOR RESIDUE TTP A 803
ChainResidue
AASP7
APHE8
AASP9
ATYR10
APHE11
ATYR12
AALA44
ATHR45
ATYR48
AARG51
AASP105
ALYS159
ACA401
ACA402
AHOH813
AHOH821
AHOH856
AHOH882
AHOH899
AHOH930
AHOH943
AHOH947
DDA1904
DDG1905

site_idBC1
Number of Residues22
DetailsBINDING SITE FOR RESIDUE TTP B 804
ChainResidue
BASP7
BPHE8
BASP9
BTYR10
BPHE11
BTYR12
BALA44
BTHR45
BTYR48
BARG51
BASP105
BLYS159
BCA403
BCA404
BHOH823
BHOH827
BHOH840
BHOH862
BHOH865
BHOH890
EDC1813
FDA1904

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP7
BASP105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR12

218853

PDB entries from 2024-04-24

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