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1RK8

Structure of the cytosolic protein PYM bound to the Mago-Y14 core of the exon junction complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000226biological_processmicrotubule cytoskeleton organization
A0000398biological_processmRNA splicing, via spliceosome
A0003676molecular_functionnucleic acid binding
A0003723molecular_functionRNA binding
A0003729molecular_functionmRNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0006396biological_processRNA processing
A0006397biological_processmRNA processing
A0007294biological_processgermarium-derived oocyte fate determination
A0007310biological_processoocyte dorsal/ventral axis specification
A0007314biological_processoocyte anterior/posterior axis specification
A0007317biological_processregulation of pole plasm oskar mRNA localization
A0008380biological_processRNA splicing
A0035145cellular_componentexon-exon junction complex
A0042564cellular_componentNLS-dependent protein nuclear import complex
A0045451biological_processpole plasm oskar mRNA localization
A0046595biological_processestablishment of pole plasm mRNA localization
A0051028biological_processmRNA transport
A0051170biological_processimport into nucleus
A0051663biological_processoocyte nucleus localization involved in oocyte dorsal/ventral axis specification
A0071013cellular_componentcatalytic step 2 spliceosome
B0000226biological_processmicrotubule cytoskeleton organization
B0000398biological_processmRNA splicing, via spliceosome
B0003723molecular_functionRNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0006397biological_processmRNA processing
B0007315biological_processpole plasm assembly
B0007317biological_processregulation of pole plasm oskar mRNA localization
B0008103biological_processoocyte microtubule cytoskeleton polarization
B0008104biological_processprotein localization
B0008380biological_processRNA splicing
B0010628biological_processpositive regulation of gene expression
B0016325biological_processoocyte microtubule cytoskeleton organization
B0035145cellular_componentexon-exon junction complex
B0042564cellular_componentNLS-dependent protein nuclear import complex
B0045451biological_processpole plasm oskar mRNA localization
B0045495cellular_componentpole plasm
B0046594biological_processmaintenance of pole plasm mRNA location
B0048477biological_processoogenesis
B0051028biological_processmRNA transport
B0051170biological_processimport into nucleus
B0071011cellular_componentprecatalytic spliceosome
B0071013cellular_componentcatalytic step 2 spliceosome
C1903259biological_processexon-exon junction complex disassembly
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 9001
ChainResidue
AGLU138
AHOH9027
AHOH9028
AHOH9029
AHOH9071
CSER8

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 9002
ChainResidue
AASP147
AHOH9018
AHOH9019
AHOH9020
AASP87
AGLU88
AGLU91

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 9003
ChainResidue
AASP87
AGLU88
AGLN145
AHOH9017
AHOH9018
AHOH9077

224004

PDB entries from 2024-08-21

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