1QNF
STRUCTURE OF PHOTOLYASE
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003904 | molecular_function | deoxyribodipyrimidine photo-lyase activity |
| A | 0006139 | biological_process | nucleobase-containing compound metabolic process |
| A | 0006281 | biological_process | DNA repair |
| A | 0006950 | biological_process | response to stress |
| A | 0006974 | biological_process | DNA damage response |
| A | 0009416 | biological_process | response to light stimulus |
| A | 0016829 | molecular_function | lyase activity |
| A | 0071949 | molecular_function | FAD binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 24 |
| Details | BINDING SITE FOR RESIDUE FAD A 485 |
| Chain | Residue |
| A | TYR228 |
| A | ARG287 |
| A | TRP346 |
| A | ASN349 |
| A | ARG352 |
| A | ASP380 |
| A | GLY381 |
| A | ASP382 |
| A | ALA385 |
| A | ASN386 |
| A | HOH578 |
| A | THR240 |
| A | HOH601 |
| A | HOH616 |
| A | HOH631 |
| A | HOH632 |
| A | HOH634 |
| A | SER241 |
| A | GLY242 |
| A | LEU243 |
| A | SER244 |
| A | LEU247 |
| A | TRP280 |
| A | GLU283 |
| site_id | AC2 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE HDF A 486 |
| Chain | Residue |
| A | ARG10 |
| A | PHE35 |
| A | CYS36 |
| A | LEU37 |
| A | ASP38 |
| A | ILE41 |
| A | MET47 |
| A | ARG51 |
| A | LEU55 |
| A | ASP101 |
| A | GLU103 |
| A | GLY106 |
| A | ARG109 |
| A | LYS248 |
| A | PHE249 |
| A | HOH635 |
| A | HOH636 |
| A | HOH637 |
| A | HOH647 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 129 |
| Details | Domain: {"description":"Photolyase/cryptochrome alpha/beta"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 7 |
| Details | Region: {"description":"DNA-binding"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 8 |
| Details | Region: {"description":"Interaction with DNA"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 15 |
| Details | Binding site: {} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 17 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15213381","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15576622","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9360600","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 3 |
| Details | Site: {"description":"Electron transfer via tryptophanyl radical","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1dnp |
| Chain | Residue | Details |
| A | TRP314 | |
| A | TRP390 | |
| A | TRP367 |
