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1QMI

Crystal structure of RNA 3'-terminal phosphate cyclase, an ubiquitous enzyme with unusual topology

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0003963molecular_functionRNA-3'-phosphate cyclase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006396biological_processRNA processing
A0016874molecular_functionligase activity
B0003824molecular_functioncatalytic activity
B0003963molecular_functionRNA-3'-phosphate cyclase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006396biological_processRNA processing
B0016874molecular_functionligase activity
C0003824molecular_functioncatalytic activity
C0003963molecular_functionRNA-3'-phosphate cyclase activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0006396biological_processRNA processing
C0016874molecular_functionligase activity
D0003824molecular_functioncatalytic activity
D0003963molecular_functionRNA-3'-phosphate cyclase activity
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0006396biological_processRNA processing
D0016874molecular_functionligase activity
Functional Information from PROSITE/UniProt
site_idPS01287
Number of Residues11
DetailsRTC RNA 3'-terminal phosphate cyclase signature. HGfyPaGGGvV
ChainResidueDetails
AHIS158-VAL168

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Tele-AMP-histidine intermediate => ECO:0000269|PubMed:20399182, ECO:0007744|PDB:1QMH
ChainResidueDetails
AHIS309
BHIS309
CHIS309
DHIS309

site_idSWS_FT_FI2
Number of Residues24
DetailsBINDING: BINDING => ECO:0000269|PubMed:20399182, ECO:0007744|PDB:3KGD
ChainResidueDetails
AGLN104
BASP287
BGLN288
BHIS309
CGLN104
CPRO131
CTYR284
CASP287
CGLN288
CHIS309
DGLN104
APRO131
DPRO131
DTYR284
DASP287
DGLN288
DHIS309
ATYR284
AASP287
AGLN288
AHIS309
BGLN104
BPRO131
BTYR284

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qmh
ChainResidueDetails
AHIS309

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qmh
ChainResidueDetails
BHIS309

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qmh
ChainResidueDetails
CHIS309

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qmh
ChainResidueDetails
DHIS309

site_idMCSA1
Number of Residues2
DetailsM-CSA 882
ChainResidueDetails
AGLU14modifies pKa
AHIS309covalent catalysis

site_idMCSA2
Number of Residues2
DetailsM-CSA 882
ChainResidueDetails
BGLU14modifies pKa
BHIS309covalent catalysis

site_idMCSA3
Number of Residues2
DetailsM-CSA 882
ChainResidueDetails
CGLU14modifies pKa
CHIS309covalent catalysis

site_idMCSA4
Number of Residues2
DetailsM-CSA 882
ChainResidueDetails
DGLU14modifies pKa
DHIS309covalent catalysis

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PDB entries from 2024-10-30

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