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1Q92

Crystal structure of human mitochondrial deoxyribonucleotidase in complex with the inhibitor PMcP-U

Functional Information from GO Data
ChainGOidnamespacecontents
A0008253molecular_function5'-nucleotidase activity
A0009264biological_processdeoxyribonucleotide catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1003
ChainResidue
AASP41
AASP43
AASP176
AHOH2008
AHOH2011
AHOH2135

site_idAC2
Number of Residues19
DetailsBINDING SITE FOR RESIDUE DRM A 1001
ChainResidue
APHE75
ATRP76
AVAL77
ASER131
AILE133
ALYS165
AARG177
AHOH2008
AHOH2011
AHOH2015
AHOH2022
AHOH2047
AHOH2135
AHOH2151
AHOH2232
AHOH2245
AASP41
AASP43
APHE49

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 2001
ChainResidue
AARG73
AGLY74
AHIS198
AASN199
AGLN200
AHIS201
ALEU202
AHOH2302
AHOH2304

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Nucleophile
ChainResidueDetails
AASP41

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton donor => ECO:0000305
ChainResidueDetails
AASP43

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:12352955
ChainResidueDetails
AASP41
AASP176

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING:
ChainResidueDetails
AASP43
APHE49
APHE75
ATRP76
AVAL77
ATRP96
ATHR130
ALYS165

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1q91
ChainResidueDetails
AASP43
AASP41

site_idMCSA1
Number of Residues3
DetailsM-CSA 812
ChainResidueDetails
AASP41covalently attached, metal ligand, nucleofuge, nucleophile
AASP43metal ligand
AASP176metal ligand

222624

PDB entries from 2024-07-17

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