Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1PVY

3,4-dihydroxy-2-butanone 4-phosphate synthase from M. jannaschii in complex with ribulose 5-phosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003824molecular_functioncatalytic activity
A0005829cellular_componentcytosol
A0008686molecular_function3,4-dihydroxy-2-butanone-4-phosphate synthase activity
A0009231biological_processriboflavin biosynthetic process
A0016829molecular_functionlyase activity
A0030145molecular_functionmanganese ion binding
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003824molecular_functioncatalytic activity
B0005829cellular_componentcytosol
B0008686molecular_function3,4-dihydroxy-2-butanone-4-phosphate synthase activity
B0009231biological_processriboflavin biosynthetic process
B0016829molecular_functionlyase activity
B0030145molecular_functionmanganese ion binding
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE 5RP A 501
ChainResidue
AARG25
ATHR165
AILE183
AGLU185
AZN502
ACA503
AHOH723
AHOH766
AHOH847
AHOH851
AHOH852
AGLU26
AASP30
ACYS55
ATYR95
ALEU151
AARG161
AGLY163
AHIS164

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE 5RP B 601
ChainResidue
BARG25
BGLU26
BASP30
BCYS55
BPHE101
BARG161
BGLY163
BHIS164
BTHR165
BGLU185
BZN602
BCA603
BHOH772
BHOH778
BHOH785
BHOH804
BHOH805
BHOH806

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 502
ChainResidue
AGLU26
AHIS164
A5RP501
AHOH852

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A 503
ChainResidue
AGLU26
ATYR95
A5RP501
AHOH851

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 602
ChainResidue
BGLU26
BHIS164
B5RP601
BHOH805

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 603
ChainResidue
BGLU26
B5RP601
BHOH764
BHOH804
BHOH806

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 701
ChainResidue
AASP96
AGLU97
AHOH753
AHOH769
AHOH774
AHOH806

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 702
ChainResidue
AGLU204
AASN207
AHOH787
BHOH613
BHOH655

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ZN A 703
ChainResidue
AHIS206

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:12904291, ECO:0000269|PubMed:15213409, ECO:0007744|PDB:1PVY, ECO:0007744|PDB:1SNN
ChainResidueDetails
AARG25
AASP30
AARG161
BARG25
BASP30
BARG161

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000305|PubMed:12904291, ECO:0000305|PubMed:15213409, ECO:0007744|PDB:1PVY, ECO:0007744|PDB:1SNN
ChainResidueDetails
AGLU26
AHIS164
BGLU26
BHIS164

site_idSWS_FT_FI3
Number of Residues4
DetailsSITE: Essential for catalytic activity
ChainResidueDetails
ASER147
AGLU185
BSER147
BGLU185

Catalytic Information from CSA
site_idCSA1
Number of Residues6
DetailsAnnotated By Reference To The Literature 1snn
ChainResidueDetails
AGLU185
AASN106
ATYR95
AASP30
ASER147
ACYS55

site_idCSA2
Number of Residues6
DetailsAnnotated By Reference To The Literature 1snn
ChainResidueDetails
BGLU185
BASN106
BTYR95
BASP30
BSER147
BCYS55

site_idMCSA1
Number of Residues6
DetailsM-CSA 648
ChainResidueDetails
AASP30proton shuttle (general acid/base)
ACYS55proton shuttle (general acid/base)
ATYR95electrostatic stabiliser
AASN106electrostatic stabiliser
ASER147electrostatic stabiliser, proton shuttle (general acid/base)
AGLU185proton shuttle (general acid/base)

site_idMCSA2
Number of Residues6
DetailsM-CSA 648
ChainResidueDetails
BASP30proton shuttle (general acid/base)
BCYS55proton shuttle (general acid/base)
BTYR95electrostatic stabiliser
BASN106electrostatic stabiliser
BSER147electrostatic stabiliser, proton shuttle (general acid/base)
BGLU185proton shuttle (general acid/base)

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon