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1PT7

Crystal structure of the apo-form of the yfdW gene product of E. coli

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0008410molecular_functionCoA-transferase activity
A0016740molecular_functiontransferase activity
A0033608molecular_functionformyl-CoA transferase activity
A0033611biological_processoxalate catabolic process
A0071468biological_processcellular response to acidic pH
B0003824molecular_functioncatalytic activity
B0008410molecular_functionCoA-transferase activity
B0016740molecular_functiontransferase activity
B0033608molecular_functionformyl-CoA transferase activity
B0033611biological_processoxalate catabolic process
B0071468biological_processcellular response to acidic pH
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 A 601
ChainResidue
ATYR139
BHOH705
AGLU140
AASP169
APO4602
AHOH712
AHOH804
AHOH964
BGLY248
BHOH703

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 A 602
ChainResidue
AVAL16
AGLN48
ATYR59
ATYR139
APO4601
APO4605
BGLY248
BGLY249
BGLN250

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 B 603
ChainResidue
AGLY249
AGLN250
BVAL16
BGLN48
BTYR59
BTYR139
BPO4604
BPO4606

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 B 604
ChainResidue
AGLY248
AHOH709
BTYR139
BGLU140
BASP169
BPO4603
BHOH720
BHOH748
BHOH763

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 A 605
ChainResidue
AVAL44
AGLN48
ATYR139
APO4602
BGLN250
BGLN273

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 B 606
ChainResidue
AGLN250
AGLN273
BGLN48
BTYR139
BPO4603

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 A 607
ChainResidue
AHIS322
ALEU339
AGLU343
AASP347
AHOH833
BTYR133

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 B 608
ChainResidue
ATYR133
BHIS322
BLEU339
BGLU343
BASP347
BHOH800

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 701
ChainResidue
ATRP28
APRO381
AASP382

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 702
ChainResidue
BALA27
BTRP28
BPRO381
BASP382

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"12844490","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues22
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00742","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"14993676","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00742","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues4
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1xvt
ChainResidueDetails
AASP169

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1xvt
ChainResidueDetails
BASP169

243083

PDB entries from 2025-10-15

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