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1P9P

The Crystal Structure of a M1G37 tRNA Methyltransferase, TrmD

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0002939biological_processtRNA N1-guanine methylation
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0016740molecular_functiontransferase activity
A0030488biological_processtRNA methylation
A0032259biological_processmethylation
A0042802molecular_functionidentical protein binding
A0042803molecular_functionprotein homodimerization activity
A0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues22
DetailsBINDING SITE FOR RESIDUE SAH A 300
ChainResidue
ATYR86
ATRP131
ASER132
AILE133
AGLY134
ATYR136
ALEU138
AGLY140
AGLY141
APRO144
AASP177
ALEU87
AHIS180
AHOH411
AHOH419
ASER88
APRO89
AGLN90
AGLY113
ATYR115
AGLU116
AGLY117

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000305|PubMed:14583191
ChainResidueDetails
AASP169

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING:
ChainResidueDetails
ATYR86

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLY113

site_idSWS_FT_FI4
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:14583191
ChainResidueDetails
AILE133

218853

PDB entries from 2024-04-24

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