1OYR
Crystal structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000049 | molecular_function | tRNA binding |
A | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
A | 0003723 | molecular_function | RNA binding |
A | 0006364 | biological_process | rRNA processing |
A | 0008033 | biological_process | tRNA processing |
A | 0009022 | molecular_function | tRNA nucleotidyltransferase activity |
A | 0016075 | biological_process | rRNA catabolic process |
A | 0016779 | molecular_function | nucleotidyltransferase activity |
A | 0031125 | biological_process | rRNA 3'-end processing |
B | 0000049 | molecular_function | tRNA binding |
B | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
B | 0003723 | molecular_function | RNA binding |
B | 0006364 | biological_process | rRNA processing |
B | 0008033 | biological_process | tRNA processing |
B | 0009022 | molecular_function | tRNA nucleotidyltransferase activity |
B | 0016075 | biological_process | rRNA catabolic process |
B | 0016779 | molecular_function | nucleotidyltransferase activity |
B | 0031125 | biological_process | rRNA 3'-end processing |
C | 0000049 | molecular_function | tRNA binding |
C | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
C | 0003723 | molecular_function | RNA binding |
C | 0006364 | biological_process | rRNA processing |
C | 0008033 | biological_process | tRNA processing |
C | 0009022 | molecular_function | tRNA nucleotidyltransferase activity |
C | 0016075 | biological_process | rRNA catabolic process |
C | 0016779 | molecular_function | nucleotidyltransferase activity |
C | 0031125 | biological_process | rRNA 3'-end processing |
D | 0000049 | molecular_function | tRNA binding |
D | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
D | 0003723 | molecular_function | RNA binding |
D | 0006364 | biological_process | rRNA processing |
D | 0008033 | biological_process | tRNA processing |
D | 0009022 | molecular_function | tRNA nucleotidyltransferase activity |
D | 0016075 | biological_process | rRNA catabolic process |
D | 0016779 | molecular_function | nucleotidyltransferase activity |
D | 0031125 | biological_process | rRNA 3'-end processing |
E | 0000049 | molecular_function | tRNA binding |
E | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
E | 0003723 | molecular_function | RNA binding |
E | 0006364 | biological_process | rRNA processing |
E | 0008033 | biological_process | tRNA processing |
E | 0009022 | molecular_function | tRNA nucleotidyltransferase activity |
E | 0016075 | biological_process | rRNA catabolic process |
E | 0016779 | molecular_function | nucleotidyltransferase activity |
E | 0031125 | biological_process | rRNA 3'-end processing |
F | 0000049 | molecular_function | tRNA binding |
F | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
F | 0003723 | molecular_function | RNA binding |
F | 0006364 | biological_process | rRNA processing |
F | 0008033 | biological_process | tRNA processing |
F | 0009022 | molecular_function | tRNA nucleotidyltransferase activity |
F | 0016075 | biological_process | rRNA catabolic process |
F | 0016779 | molecular_function | nucleotidyltransferase activity |
F | 0031125 | biological_process | rRNA 3'-end processing |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 301 |
Chain | Residue |
A | ARG86 |
A | GLY124 |
A | THR125 |
A | ARG126 |
site_id | AC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 A 302 |
Chain | Residue |
A | TRP58 |
A | THR60 |
A | ARG99 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 B 303 |
Chain | Residue |
B | THR125 |
B | ARG126 |
B | ARG86 |
B | GLY124 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 B 304 |
Chain | Residue |
B | TRP58 |
B | THR60 |
B | ARG99 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 C 305 |
Chain | Residue |
C | ARG86 |
C | GLY124 |
C | THR125 |
C | ARG126 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 C 306 |
Chain | Residue |
C | TRP58 |
C | THR60 |
C | ARG99 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 D 307 |
Chain | Residue |
D | ARG86 |
D | GLY124 |
D | THR125 |
D | ARG126 |
site_id | AC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 D 308 |
Chain | Residue |
D | TRP58 |
D | THR60 |
D | ARG99 |
site_id | AC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 E 309 |
Chain | Residue |
E | ARG86 |
E | GLY124 |
E | THR125 |
E | ARG126 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 E 310 |
Chain | Residue |
E | TRP58 |
E | THR60 |
E | ARG99 |
site_id | BC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 F 311 |
Chain | Residue |
F | ARG86 |
F | GLY124 |
F | THR125 |
F | ARG126 |
site_id | BC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 F 312 |
Chain | Residue |
F | TRP58 |
F | THR60 |
F | ARG99 |
site_id | BC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CD A 501 |
Chain | Residue |
A | HIS3 |
A | GLU179 |
C | HIS8 |
site_id | BC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CD E 502 |
Chain | Residue |
E | HIS3 |
F | HIS3 |
F | GLU179 |
site_id | BC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CD D 503 |
Chain | Residue |
B | HIS8 |
D | HIS3 |
D | GLU179 |
Functional Information from PROSITE/UniProt
site_id | PS01277 |
Number of Residues | 13 |
Details | RIBONUCLEASE_PH Ribonuclease PH signature. CDVIQADGGtr.TA |
Chain | Residue | Details |
A | CYS116-ALA128 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00564 |
Chain | Residue | Details |
A | ARG86 | |
B | ARG86 | |
C | ARG86 | |
D | ARG86 | |
E | ARG86 | |
F | ARG86 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00564, ECO:0000305|PubMed:14767080 |
Chain | Residue | Details |
A | GLY124 | |
B | GLY124 | |
C | GLY124 | |
D | GLY124 | |
E | GLY124 | |
F | GLY124 |