1OYP
Crystal Structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000049 | molecular_function | tRNA binding |
| A | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
| A | 0003723 | molecular_function | RNA binding |
| A | 0008033 | biological_process | tRNA processing |
| A | 0009022 | molecular_function | tRNA nucleotidyltransferase activity |
| A | 0016075 | biological_process | rRNA catabolic process |
| A | 0031125 | biological_process | rRNA 3'-end processing |
| B | 0000049 | molecular_function | tRNA binding |
| B | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
| B | 0003723 | molecular_function | RNA binding |
| B | 0008033 | biological_process | tRNA processing |
| B | 0009022 | molecular_function | tRNA nucleotidyltransferase activity |
| B | 0016075 | biological_process | rRNA catabolic process |
| B | 0031125 | biological_process | rRNA 3'-end processing |
| C | 0000049 | molecular_function | tRNA binding |
| C | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
| C | 0003723 | molecular_function | RNA binding |
| C | 0008033 | biological_process | tRNA processing |
| C | 0009022 | molecular_function | tRNA nucleotidyltransferase activity |
| C | 0016075 | biological_process | rRNA catabolic process |
| C | 0031125 | biological_process | rRNA 3'-end processing |
| D | 0000049 | molecular_function | tRNA binding |
| D | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
| D | 0003723 | molecular_function | RNA binding |
| D | 0008033 | biological_process | tRNA processing |
| D | 0009022 | molecular_function | tRNA nucleotidyltransferase activity |
| D | 0016075 | biological_process | rRNA catabolic process |
| D | 0031125 | biological_process | rRNA 3'-end processing |
| E | 0000049 | molecular_function | tRNA binding |
| E | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
| E | 0003723 | molecular_function | RNA binding |
| E | 0008033 | biological_process | tRNA processing |
| E | 0009022 | molecular_function | tRNA nucleotidyltransferase activity |
| E | 0016075 | biological_process | rRNA catabolic process |
| E | 0031125 | biological_process | rRNA 3'-end processing |
| F | 0000049 | molecular_function | tRNA binding |
| F | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
| F | 0003723 | molecular_function | RNA binding |
| F | 0008033 | biological_process | tRNA processing |
| F | 0009022 | molecular_function | tRNA nucleotidyltransferase activity |
| F | 0016075 | biological_process | rRNA catabolic process |
| F | 0031125 | biological_process | rRNA 3'-end processing |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 A 301 |
| Chain | Residue |
| A | ARG86 |
| A | GLY124 |
| A | THR125 |
| A | ARG126 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 302 |
| Chain | Residue |
| A | TRP58 |
| A | THR60 |
| A | ARG99 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 B 303 |
| Chain | Residue |
| B | THR125 |
| B | ARG126 |
| B | ARG86 |
| B | GLY124 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 304 |
| Chain | Residue |
| B | TRP58 |
| B | THR60 |
| B | ARG99 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 C 305 |
| Chain | Residue |
| C | ARG86 |
| C | GLY124 |
| C | THR125 |
| C | ARG126 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 C 306 |
| Chain | Residue |
| C | TRP58 |
| C | THR60 |
| C | ARG99 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 D 307 |
| Chain | Residue |
| D | ARG86 |
| D | GLY124 |
| D | THR125 |
| D | ARG126 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 D 308 |
| Chain | Residue |
| D | TRP58 |
| D | THR60 |
| D | ARG99 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 E 309 |
| Chain | Residue |
| E | ARG86 |
| E | GLY124 |
| E | THR125 |
| E | ARG126 |
| site_id | BC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 E 310 |
| Chain | Residue |
| E | TRP58 |
| E | THR60 |
| E | ARG99 |
| site_id | BC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 F 311 |
| Chain | Residue |
| F | ARG86 |
| F | GLY124 |
| F | THR125 |
| F | ARG126 |
| site_id | BC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 F 312 |
| Chain | Residue |
| F | TRP58 |
| F | THR60 |
| F | ARG99 |
Functional Information from PROSITE/UniProt
| site_id | PS01277 |
| Number of Residues | 13 |
| Details | RIBONUCLEASE_PH Ribonuclease PH signature. CDVIQADGGtr.TA |
| Chain | Residue | Details |
| A | CYS116-ALA128 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00564","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00564","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"14767080","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
