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Three dimensional structure of the oxidized form of nine heme cytochrome c at PH 7.5

Functional Information from GO Data
ChainGOidnamespacecontents
A0009055molecular_functionelectron transfer activity
A0020037molecular_functionheme binding
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
B0009055molecular_functionelectron transfer activity
B0020037molecular_functionheme binding
B0042597cellular_componentperiplasmic space
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT B1303
ChainResidue
BALA69
BHOH2087

site_idAC2
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC A1294
ChainResidue
ACYS47
ACYS50
AHIS51
APRO56
AVAL57
ASER58
AHEC1296
AHOH2292
AHOH2293
AHOH2294
AHOH2295
AHOH2296
AHOH2297
AHOH2298
ASER8
AALA10
AILE14
APHE35
AHIS37
AHIS40
AILE44

site_idAC3
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEC A1295
ChainResidue
ACYS50
AHIS52
ATHR53
AASP55
AVAL57
ACYS59
ATHR61
ACYS62
AHIS63
AGLU70
AILE74
AARG78
AALA79
AARG88
APRO94
AVAL95
AHOH2299
AHOH2300
AHOH2301

site_idAC4
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC A1296
ChainResidue
AVAL33
APHE35
AASN36
AHIS40
ALYS43
AVAL95
ASER96
ACYS97
ACYS100
AHIS101
AGLN104
ALYS212
ALEU213
AALA216
AHEC1294
AHEC1298
AHOH2302
AHOH2303
AHOH2304
AHOH2305
AHOH2306
AHOH2307
AHOH2308

site_idAC5
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC A1297
ChainResidue
ATHR105
AARG108
AGLU110
ACYS111
ACYS114
AHIS115
AVAL118
APRO120
ALYS121
AARG122
ATRP126
AILE208
AASP211
ALEU213
APHE217
AHIS218
AILE223
ALEU224
ATHR227
AHOH2309
AHOH2310
AHOH2311

site_idAC6
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC A1298
ChainResidue
ATRP126
ACYS127
ACYS130
AHIS131
AHEC1296
AHOH2031
AHOH2312
BARG231
BPRO239
BSER243
AMET16
APHE17
APRO18
AALA29
AMET30
ALYS31
APRO32
AVAL33
ALEU76
AMET80
AHIS81
ACYS97

site_idAC7
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC A1299
ChainResidue
AVAL172
AALA177
APRO178
APHE195
AHIS197
ALEU201
ALEU224
ACYS225
ACYS228
AHIS229
ALEU236
APRO238
ALYS240
ACYS241
ATYR263
AHEC1301
AHOH2242
AHOH2313
AHOH2314
AHOH2316
BLYS26

site_idAC8
Number of Residues16
DetailsBINDING SITE FOR RESIDUE HEC A1300
ChainResidue
ACYS228
AHIS230
AARG231
ALYS240
ACYS241
ACYS244
AHIS245
AGLY255
AARG256
APRO257
AALA262
ALEU265
AGLN266
AHOH2317
AHOH2318
AHOH2319

site_idAC9
Number of Residues20
DetailsBINDING SITE FOR RESIDUE HEC A1301
ChainResidue
ACYS114
AILE117
ASER193
APHE195
ATHR196
AARG199
AHIS200
ASER203
ALEU204
AARG207
ACYS267
ACYS270
AHIS271
AMET274
AVAL276
AARG278
APRO279
AHEC1299
AHEC1302
AHOH2321

site_idBC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC A1302
ChainResidue
AILE183
AASP184
AALA185
ALEU186
AALA187
AASP188
ALYS189
ATYR190
AMET260
ATYR263
AHIS264
AMET268
AHIS271
AASP281
AASP283
ACYS284
ACYS287
AHIS288
AHEC1301
AHOH2322
AHOH2323

site_idBC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE HEC B1294
ChainResidue
BSER8
BALA10
BILE14
BMET16
BPHE35
BHIS37
BILE44
BCYS47
BCYS50
BHIS51
BPRO56
BSER58
BCYS59
BHOH2282
BHOH2284
BHOH2285
BHOH2286
BHOH2287

site_idBC3
Number of Residues17
DetailsBINDING SITE FOR RESIDUE HEC B1295
ChainResidue
BCYS50
BHIS52
BVAL57
BCYS59
BTHR61
BCYS62
BHIS63
BGLU70
BGLY71
BARG78
BALA79
BARG88
BPRO94
BVAL95
BHOH2288
BHOH2289
BHOH2290

site_idBC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE HEC B1296
ChainResidue
BVAL33
BPHE35
BASN36
BHIS40
BVAL95
BSER96
BCYS97
BCYS100
BHIS101
BLYS212
BALA216
BHOH2165
BHOH2291
BHOH2292
BHOH2293
BHOH2294
BHOH2295

site_idBC5
Number of Residues17
DetailsBINDING SITE FOR RESIDUE HEC B1297
ChainResidue
BTHR105
BARG108
BGLU110
BCYS111
BCYS114
BHIS115
BPRO120
BLYS121
BARG122
BTRP126
BILE208
BASP211
BPHE217
BHIS218
BILE223
BTHR227
BHOH2296

site_idBC6
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC B1298
ChainResidue
AARG231
APRO239
ASER243
BMET16
BPHE17
BPRO18
BALA29
BMET30
BLYS31
BPRO32
BVAL33
BLEU76
BMET80
BHIS81
BCYS97
BTRP126
BCYS127
BCYS130
BHIS131
BGOL1305
BHOH2297
BHOH2298

site_idBC7
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEC B1299
ChainResidue
AHOH2024
BVAL172
BALA177
BPRO178
BPHE195
BHIS197
BLEU201
BLEU224
BCYS225
BCYS228
BHIS229
BLEU236
BLYS240
BCYS241
BTYR263
BHEC1301
BHOH2177
BHOH2299
BHOH2300

site_idBC8
Number of Residues15
DetailsBINDING SITE FOR RESIDUE HEC B1300
ChainResidue
BCYS228
BHIS230
BARG231
BLYS240
BCYS241
BCYS244
BHIS245
BARG256
BPRO257
BALA262
BLEU265
BGLN266
BHOH2301
BHOH2302
BHOH2303

site_idBC9
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC B1301
ChainResidue
BCYS114
BILE183
BSER193
BPHE195
BTHR196
BARG199
BHIS200
BSER203
BARG207
BCYS267
BCYS270
BHIS271
BMET274
BVAL276
BPRO279
BHEC1299
BHEC1302
BHOH2304
BHOH2305
BHOH2307
BHOH2308

site_idCC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC B1302
ChainResidue
BILE183
BASP184
BALA185
BLEU186
BALA187
BASP188
BLYS189
BTYR190
BMET260
BTYR263
BHIS264
BMET268
BHIS271
BARG280
BASP281
BCYS284
BCYS287
BHIS288
BHEC1301
BHOH2309
BHOH2310

site_idCC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A1303
ChainResidue
AGLY27
AALA29
APRO32
AMET137
AMET142
AHOH2324
BTHR237

site_idCC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B1304
ChainResidue
ATHR237
BGLY27
BALA29
BLYS31
BPRO32
BMET137
BHOH2311
BHOH2312

site_idCC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B1305
ChainResidue
AARG256
BASP77
BHIS81
BTRP126
BHEC1298
BHOH2313
BHOH2314
BHOH2315
BHOH2316

site_idCC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B1306
ChainResidue
AGLU124
AHOH2130
BLYS121
BARG231
BSER232
BPRO233
BHOH2317

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues36
DetailsBINDING: axial binding residue
ChainResidueDetails
AHIS63
AHIS81
AHIS101
AHIS115
AHIS131
AHIS197
AHIS200
AHIS218
AHIS229
AHIS230
AHIS245
AHIS264
AHIS271
AHIS288
BHIS37
BHIS40
BHIS51
BHIS52
BHIS63
BHIS81
BHIS101
BHIS115
BHIS131
BHIS197
BHIS200
BHIS218
BHIS229
BHIS230
BHIS245
BHIS264
BHIS271
BHIS288
AHIS37
AHIS40
AHIS51
AHIS52

site_idSWS_FT_FI2
Number of Residues36
DetailsBINDING: covalent
ChainResidueDetails
ACYS97
ACYS100
ACYS111
ACYS114
ACYS127
ACYS130
ACYS225
ACYS228
ACYS241
ACYS244
ACYS267
ACYS270
ACYS284
ACYS287
BCYS47
BCYS50
BCYS59
BCYS62
BCYS97
BCYS100
BCYS111
BCYS114
BCYS127
BCYS130
BCYS225
BCYS228
BCYS241
BCYS244
BCYS267
BCYS270
BCYS284
BCYS287
ACYS47
ACYS50
ACYS59
ACYS62

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PDB entries from 2024-05-15

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