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1O23

CRYSTAL STRUCTURE OF LACTOSE SYNTHASE IN THE PRESENCE OF UDP-GLUCOSE

Replaces:  1NT7Replaces:  1JNC
Functional Information from GO Data
ChainGOidnamespacecontents
A0004461molecular_functionlactose synthase activity
A0005509molecular_functioncalcium ion binding
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005989biological_processlactose biosynthetic process
A0032991cellular_componentprotein-containing complex
A0046872molecular_functionmetal ion binding
B0005975biological_processcarbohydrate metabolic process
B0016757molecular_functionglycosyltransferase activity
C0004461molecular_functionlactose synthase activity
C0005509molecular_functioncalcium ion binding
C0005515molecular_functionprotein binding
C0005576cellular_componentextracellular region
C0005989biological_processlactose biosynthetic process
C0032991cellular_componentprotein-containing complex
C0046872molecular_functionmetal ion binding
D0005975biological_processcarbohydrate metabolic process
D0016757molecular_functionglycosyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 805
ChainResidue
ALYS79
AASP82
AGLU84
AASP87
AASP88
AHOH903
AHOH912

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA C 806
ChainResidue
CGLU486
CASP489
CASP490
CHOH911
CHOH944
CLYS481
CASP484

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN B 807
ChainResidue
BASP254
BMET344
BHIS347
BUPG809
BHOH919

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN D 808
ChainResidue
DASP656
DMET746
DHIS749
DUPG810
DHOH907

site_idAC5
Number of Residues25
DetailsBINDING SITE FOR RESIDUE UPG B 809
ChainResidue
BPRO187
BPHE188
BARG189
BARG191
BPHE226
BARG228
BASP252
BVAL253
BASP254
BTYR289
BGLY292
BTRP314
BGLU317
BASP318
BMET344
BHIS347
BASP350
BMN807
BHOH919
BHOH960
BHOH962
BHOH1017
BHOH1034
BHOH1060
BHOH1081

site_idAC6
Number of Residues25
DetailsBINDING SITE FOR RESIDUE UPG D 810
ChainResidue
DPRO589
DPHE590
DARG591
DARG593
DPHE628
DARG630
DASP654
DVAL655
DASP656
DTYR691
DGLY694
DTRP716
DGLY717
DGLU719
DASP720
DMET746
DHIS749
DASP752
DMN808
DHOH907
DHOH909
DHOH1002
DHOH1135
DHOH1198
DHOH1203

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE UDP B 811
ChainResidue
BLEU155
BLYS156
BGLU159
BGLN192
BGLN386
BTYR388
BPRO389
BLEU390
BTYR391
BLYS393

site_idAC8
Number of Residues10
DetailsBINDING SITE FOR RESIDUE UDP D 812
ChainResidue
DLEU557
DLYS558
DTYR790
DPRO791
DLEU792
DTYR793
DLYS795
DHOH1098
DHOH1182
DHOH1233

site_idAC9
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PG4 A 813
ChainResidue
AGLY35
AALA40
AHOH950
AHOH1271
BLYS279
BTRP314
BARG349
AGLU2
APHE31
AHIS32
ATHR33
ASER34

site_idBC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PG4 C 814
ChainResidue
CPHE433
CHIS434
CTHR435
CSER436
CGLY437
CHOH926
CHOH1030
CHOH1330
DPHE682
DTRP716
DARG751

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MES A 815
ChainResidue
ALYS114
ALEU115
AGLU116
AHOH948

Functional Information from PROSITE/UniProt
site_idPS00128
Number of Residues19
DetailsGLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CgisCdkLlddELdddiaC
ChainResidueDetails
ACYS73-CYS91

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsBINDING:
ChainResidueDetails
BPRO187
DPHE628
DVAL655
DASP656
DTRP716
DGLY718
DHIS749
DARG761
BPHE226
BVAL253
BASP254
BTRP314
BGLY316
BHIS347
BARG359
DPRO589

site_idSWS_FT_FI2
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
AASN45
CASN447

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1fr8
ChainResidueDetails
BARG359
BGLU317
BASP319

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1fr8
ChainResidueDetails
DARG761
DGLU719
DASP721

site_idMCSA1
Number of Residues8
DetailsM-CSA 570
ChainResidueDetails
BASP252electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor
BASP254metal ligand
BTRP314electrostatic stabiliser, hydrogen bond donor
BGLU317electrostatic stabiliser, hydrogen bond acceptor
BASP318activator, electrostatic stabiliser, proton acceptor, proton donor
BMET344metal ligand
BHIS347metal ligand
BARG349electrostatic stabiliser, hydrogen bond donor

site_idMCSA2
Number of Residues8
DetailsM-CSA 570
ChainResidueDetails
DASP654electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor
DASP656metal ligand
DTRP716electrostatic stabiliser, hydrogen bond donor
DGLU719electrostatic stabiliser, hydrogen bond acceptor
DASP720activator, electrostatic stabiliser, proton acceptor, proton donor
DMET746metal ligand
DHIS749metal ligand
DARG751electrostatic stabiliser, hydrogen bond donor

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PDB entries from 2024-10-30

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