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1NY5

Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state

Functional Information from GO Data
ChainGOidnamespacecontents
A0000160biological_processphosphorelay signal transduction system
A0005524molecular_functionATP binding
A0006355biological_processregulation of DNA-templated transcription
A0008134molecular_functiontranscription factor binding
A0016887molecular_functionATP hydrolysis activity
B0000160biological_processphosphorelay signal transduction system
B0005524molecular_functionATP binding
B0006355biological_processregulation of DNA-templated transcription
B0008134molecular_functiontranscription factor binding
B0016887molecular_functionATP hydrolysis activity
Functional Information from PDB Data
site_idAC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 500
ChainResidue
AADP604
AHOH761

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 A 600
ChainResidue
AHIS44
AASN46
AARG119
ALYS123
BGLU224
BGLU228

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 B 601
ChainResidue
AGLU228
BHIS44
BASN46
BGLU72
BARG119
BLYS123
BHOH610
BHOH615
AGLU224

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 A 602
ChainResidue
ALYS250
AARG253
APHE260
ATYR261
ALYS314
AHOH616
AHOH677
AHOH706
AHOH760

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 A 603
ChainResidue
ATHR340
ASER342
AASP376
AARG377
AHOH744
BGLY264

site_idAC6
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ADP A 604
ChainResidue
AGLU137
ATYR139
AVAL140
AGLY170
AVAL171
AGLY172
ALYS173
AGLU174
AVAL175
ALEU320
AVAL356
AARG357
ALYS360
AMG500
AHOH605
AHOH608
AHOH643
AHOH661
AHOH681
AHOH702

site_idAC7
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ADP B 602
ChainResidue
BTYR139
BVAL140
BGLY170
BVAL171
BGLY172
BLYS173
BGLU174
BVAL175
BLEU320
BVAL356
BARG357
BLYS360
BHOH604
BHOH606
BHOH674
BHOH677
BHOH683

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 400
ChainResidue
BGLU174
BALA193
BASN195
BASP238
BHOH607
BHOH689

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 401
ChainResidue
ALYS267
AHOH644
BSER41
BARG69

Functional Information from PROSITE/UniProt
site_idPS00675
Number of Residues14
DetailsSIGMA54_INTERACT_1 Sigma-54 interaction domain ATP-binding region A signature. VLItGESGVGKevV
ChainResidueDetails
AVAL163-VAL176

site_idPS00676
Number of Residues16
DetailsSIGMA54_INTERACT_2 Sigma-54 interaction domain ATP-binding region B signature. GfFelADGGTLFLDEI
ChainResidueDetails
AGLY225-ILE240

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PDB entries from 2024-07-24

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