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1N56

Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 401
ChainResidue
AASP7
AGLU106
AMG402
AHOH648
AHOH1023
AATP1803

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA B 403
ChainResidue
BMG404
BHOH915
BATP1804
EDA1814
BASP7
BASP105
BGLU106

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 402
ChainResidue
AASP7
APHE8
AASP105
AMG401
AHOH666
AATP1803

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 404
ChainResidue
BASP7
BPHE8
BASP105
BCA403
BHOH812
BHOH822
BATP1804

site_idAC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ATP A 1803
ChainResidue
AASP7
AASP9
ATYR10
APHE11
ATYR12
AALA44
ATHR45
ATYR48
AARG51
AALA57
AGLY58
AASP105
ALYS159
AMG401
AMG402
AHOH666
AHOH808
AHOH936
CHOH804
CDA1814
DDT1905

site_idAC6
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ATP B 1804
ChainResidue
BASP7
BPHE8
BASP9
BTYR10
BPHE11
BTYR12
BALA44
BTHR45
BTYR48
BARG51
BASP105
BLYS159
BCA403
BMG404
BHOH677
BHOH812
BHOH915
BHOH934
EHOH649
EDA1814
FDT1905

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP7
BASP105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR12

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PDB entries from 2024-07-24

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