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1N48

Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 501
ChainResidue
AASP7
AASP105
AGLU106
BHOH17
BDA1813
BATP1814

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 502
ChainResidue
AHOH514
BATP1814
AASP7
APHE8
AASP105

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 503
ChainResidue
AHOH638
BHOH214
BHOH223
BHOH239
BDA1813
BATP1814

site_idAC4
Number of Residues28
DetailsBINDING SITE FOR RESIDUE ATP B 1814
ChainResidue
AASP7
AASP9
ATYR10
ATYR12
AALA44
ATHR45
AARG51
AGLY58
AASP105
ALYS159
ACA501
ACA502
AHOH514
AHOH526
AHOH535
AHOH638
BHOH17
BHOH29
BHOH36
BHOH77
BHOH82
BHOH214
BHOH239
BCA503
BDT1812
BDA1813
CDT1906
CDA1907

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE:
ChainResidueDetails
AGLU106

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12

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PDB entries from 2024-07-24

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