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1MPL

CRYSTAL STRUCTURE OF PHOSPHONATE-INHIBITED D-ALA-D-ALA PEPTIDASE REVEALS AN ANALOG OF A TETRAHEDRAL TRANSITION STATE

Functional Information from GO Data
ChainGOidnamespacecontents
A0004180molecular_functioncarboxypeptidase activity
A0005576cellular_componentextracellular region
A0006508biological_processproteolysis
A0008360biological_processregulation of cell shape
A0009002molecular_functionserine-type D-Ala-D-Ala carboxypeptidase activity
A0009252biological_processpeptidoglycan biosynthetic process
A0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE RE1 A 400
ChainResidue
ASER62
AGLN303
ASER326
AASN327
AGOL500
AHOH1013
AHOH1039
AHOH1074
AHOH1087
AHOH1224
AARG99
APHE120
ATHR123
ATYR159
AASN161
ALEU214
AGLY300
ATHR301

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 500
ChainResidue
AASP97
APRO153
ATYR306
AASN327
AVAL329
ARE1400
AHOH1107
AHOH1237

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 501
ChainResidue
ASER86
ATHR89
AASP98
AARG99
AASP114
AASN117
ATYR159
AHOH1034
AHOH1064
AHOH1221

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 502
ChainResidue
ATYR137
AGLU172
AHIS200
AHOH1025
AHOH1049
AHOH1352

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 503
ChainResidue
AILE205
AGLY207
AHIS209
ALYS346
AHOH1045
AHOH1223
AHOH1299

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 504
ChainResidue
APRO6
AASP7
AASP8
AHIS209
AASN211
ATHR227
AGLU228
ALYS346
AHOH1109
AHOH1409

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Acyl-ester intermediate => ECO:0000269|PubMed:12215418, ECO:0000269|PubMed:12564922, ECO:0000269|PubMed:15581896
ChainResidueDetails
ASER62

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:12215418, ECO:0000269|PubMed:12564922, ECO:0000269|PubMed:15581896
ChainResidueDetails
ATYR159
AARG285
ATHR299
ASER326
APHE120

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PDB entries from 2024-06-12

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