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1MDO

Crystal structure of ArnB aminotransferase with pyridomine 5' phosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000271biological_processpolysaccharide biosynthetic process
A0008483molecular_functiontransaminase activity
A0009103biological_processlipopolysaccharide biosynthetic process
A0009245biological_processlipid A biosynthetic process
A0030170molecular_functionpyridoxal phosphate binding
A0046493biological_processlipid A metabolic process
A0046677biological_processresponse to antibiotic
A0099620molecular_functionUDP-4-amino-4-deoxy-L-arabinose aminotransferase
Functional Information from PDB Data
site_idAC1
Number of Residues17
DetailsBINDING SITE FOR RESIDUE PMP A 394
ChainResidue
ASER62
ALYS188
ALYS241
APHE330
AHOH461
AHOH833
AHOH834
AHOH836
AHOH863
AALA63
ATHR64
ATHR88
ATRP89
AASP160
AALA162
AHIS163
ASER183

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000305|PubMed:12429098, ECO:0000305|PubMed:24460375
ChainResidueDetails
ALYS188

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000269|PubMed:12429098, ECO:0007744|PDB:1MDX, ECO:0007744|PDB:1MDZ
ChainResidueDetails
ALYS188

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1b9h
ChainResidueDetails
AASP160

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1b9h
ChainResidueDetails
AILE35

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1b9h
ChainResidueDetails
AASP160
ALYS188

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1b9h
ChainResidueDetails
AALA186
AASP160

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1b9h
ChainResidueDetails
AHIS163
ALYS188

219140

PDB entries from 2024-05-01

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