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1MDO

Crystal structure of ArnB aminotransferase with pyridomine 5' phosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Spacegroup nameP 43 21 2
Unit cell lengths91.154, 91.154, 128.585
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.570 - 1.700
R-factor0.217

*

Rwork0.210
R-free0.25300
Structure solution methodMAD
RMSD bond length0.012

*

RMSD bond angle1.780

*

Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareSHARP
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.600

*

1.790
High resolution limit [Å]1.7001.700
Rmerge0.127

*

1.609

*

Total number of observations827017

*

Number of reflections60130
Completeness [%]99.9

*

99.9
Redundancy13.7

*

13.2

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

5.520

*

sodium citrate, PEG 10000, beta-mercaptoethanol, pH 5.5, VAPOR DIFFUSION, temperature 293K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein12 (mg/ml)
21reservoirsodium citrate100 (mM)pH5.5
31reservoirPEG1000018-22 (%)
41reservoirbeta-mercaptoethanol1 (mM)

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PDB entries from 2024-04-24

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