1MDO
Crystal structure of ArnB aminotransferase with pyridomine 5' phosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 91.154, 91.154, 128.585 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.570 - 1.700 |
R-factor | 0.217 * |
Rwork | 0.210 |
R-free | 0.25300 |
Structure solution method | MAD |
RMSD bond length | 0.012 * |
RMSD bond angle | 1.780 * |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | SHARP |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.600 * | 1.790 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.127 * | 1.609 * |
Total number of observations | 827017 * | |
Number of reflections | 60130 | |
Completeness [%] | 99.9 * | 99.9 |
Redundancy | 13.7 * | 13.2 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 5.5 | 20 * | sodium citrate, PEG 10000, beta-mercaptoethanol, pH 5.5, VAPOR DIFFUSION, temperature 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 12 (mg/ml) | |
2 | 1 | reservoir | sodium citrate | 100 (mM) | pH5.5 |
3 | 1 | reservoir | PEG10000 | 18-22 (%) | |
4 | 1 | reservoir | beta-mercaptoethanol | 1 (mM) |