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1MAU

Crystal structure of Tryptophanyl-tRNA Synthetase Complexed with ATP and Tryptophanamide in a Pre-Transition state Conformation

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004830molecular_functiontryptophan-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006412biological_processtranslation
A0006418biological_processtRNA aminoacylation for protein translation
A0006436biological_processtryptophanyl-tRNA aminoacylation
A0016874molecular_functionligase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 499
ChainResidue
AGLN30
ATYR33
AGLN74
AHOH540
AGOL940

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 500
ChainResidue
ALTN390
AATP400
AHOH613

site_idAC3
Number of Residues24
DetailsBINDING SITE FOR RESIDUE ATP A 400
ChainResidue
ASER11
AGLY17
AASN18
AGLY21
AALA22
ALYS111
AVAL143
AGLY144
AASP146
AGLN147
AGLY180
AALA181
AARG182
AILE183
ALYS192
AMET193
ASER194
ALYS195
ASER196
ALTN390
AMG500
AHOH506
AHOH524
AGLN9

site_idAC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE LTN A 390
ChainResidue
APHE5
ASER6
AGLY7
AGLN9
AHIS43
AGLN107
ATYR125
AMET129
AASP132
AILE133
AVAL141
AGLN147
AATP400
AMG500
AHOH613

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE CIT A 1003
ChainResidue
ASER11
AVAL47
ATRP48
AGLN49
AASP50
ASER196
AHOH581
AHOH609
AHOH620

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 930
ChainResidue
ALYS218
ATHR222
ATYR265
AGLY266
ALYS269

site_idAC7
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL A 940
ChainResidue
AASN34
ACYS35
ATYR36
ATHR73
AGLN74
AALA75
ATHR76
ALYS215
ALYS306
ANA499
AHOH559

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 950
ChainResidue
ATRP48
ALYS163
AARG164
ALEU248

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues10
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. P..SGvITIGNY
ChainResidueDetails
APRO10-TYR19

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00140, ECO:0000269|PubMed:26555258, ECO:0007744|PDB:5DK4
ChainResidueDetails
AGLN9
AGLY17
AASP132
AGLY144
AILE183
ALYS192

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 481
ChainResidueDetails
ALYS111electrostatic stabiliser
ALYS192electrostatic stabiliser
ALYS195electrostatic stabiliser

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PDB entries from 2024-04-24

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