1M8V
Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000398 | biological_process | mRNA splicing, via spliceosome |
| A | 0003723 | molecular_function | RNA binding |
| A | 0034715 | cellular_component | pICln-Sm protein complex |
| A | 0120114 | cellular_component | Sm-like protein family complex |
| A | 1990904 | cellular_component | ribonucleoprotein complex |
| B | 0000398 | biological_process | mRNA splicing, via spliceosome |
| B | 0003723 | molecular_function | RNA binding |
| B | 0034715 | cellular_component | pICln-Sm protein complex |
| B | 0120114 | cellular_component | Sm-like protein family complex |
| B | 1990904 | cellular_component | ribonucleoprotein complex |
| C | 0000398 | biological_process | mRNA splicing, via spliceosome |
| C | 0003723 | molecular_function | RNA binding |
| C | 0034715 | cellular_component | pICln-Sm protein complex |
| C | 0120114 | cellular_component | Sm-like protein family complex |
| C | 1990904 | cellular_component | ribonucleoprotein complex |
| D | 0000398 | biological_process | mRNA splicing, via spliceosome |
| D | 0003723 | molecular_function | RNA binding |
| D | 0034715 | cellular_component | pICln-Sm protein complex |
| D | 0120114 | cellular_component | Sm-like protein family complex |
| D | 1990904 | cellular_component | ribonucleoprotein complex |
| E | 0000398 | biological_process | mRNA splicing, via spliceosome |
| E | 0003723 | molecular_function | RNA binding |
| E | 0034715 | cellular_component | pICln-Sm protein complex |
| E | 0120114 | cellular_component | Sm-like protein family complex |
| E | 1990904 | cellular_component | ribonucleoprotein complex |
| F | 0000398 | biological_process | mRNA splicing, via spliceosome |
| F | 0003723 | molecular_function | RNA binding |
| F | 0034715 | cellular_component | pICln-Sm protein complex |
| F | 0120114 | cellular_component | Sm-like protein family complex |
| F | 1990904 | cellular_component | ribonucleoprotein complex |
| G | 0000398 | biological_process | mRNA splicing, via spliceosome |
| G | 0003723 | molecular_function | RNA binding |
| G | 0034715 | cellular_component | pICln-Sm protein complex |
| G | 0120114 | cellular_component | Sm-like protein family complex |
| G | 1990904 | cellular_component | ribonucleoprotein complex |
| H | 0000398 | biological_process | mRNA splicing, via spliceosome |
| H | 0003723 | molecular_function | RNA binding |
| H | 0034715 | cellular_component | pICln-Sm protein complex |
| H | 0120114 | cellular_component | Sm-like protein family complex |
| H | 1990904 | cellular_component | ribonucleoprotein complex |
| I | 0000398 | biological_process | mRNA splicing, via spliceosome |
| I | 0003723 | molecular_function | RNA binding |
| I | 0034715 | cellular_component | pICln-Sm protein complex |
| I | 0120114 | cellular_component | Sm-like protein family complex |
| I | 1990904 | cellular_component | ribonucleoprotein complex |
| J | 0000398 | biological_process | mRNA splicing, via spliceosome |
| J | 0003723 | molecular_function | RNA binding |
| J | 0034715 | cellular_component | pICln-Sm protein complex |
| J | 0120114 | cellular_component | Sm-like protein family complex |
| J | 1990904 | cellular_component | ribonucleoprotein complex |
| K | 0000398 | biological_process | mRNA splicing, via spliceosome |
| K | 0003723 | molecular_function | RNA binding |
| K | 0034715 | cellular_component | pICln-Sm protein complex |
| K | 0120114 | cellular_component | Sm-like protein family complex |
| K | 1990904 | cellular_component | ribonucleoprotein complex |
| L | 0000398 | biological_process | mRNA splicing, via spliceosome |
| L | 0003723 | molecular_function | RNA binding |
| L | 0034715 | cellular_component | pICln-Sm protein complex |
| L | 0120114 | cellular_component | Sm-like protein family complex |
| L | 1990904 | cellular_component | ribonucleoprotein complex |
| M | 0000398 | biological_process | mRNA splicing, via spliceosome |
| M | 0003723 | molecular_function | RNA binding |
| M | 0034715 | cellular_component | pICln-Sm protein complex |
| M | 0120114 | cellular_component | Sm-like protein family complex |
| M | 1990904 | cellular_component | ribonucleoprotein complex |
| N | 0000398 | biological_process | mRNA splicing, via spliceosome |
| N | 0003723 | molecular_function | RNA binding |
| N | 0034715 | cellular_component | pICln-Sm protein complex |
| N | 0120114 | cellular_component | Sm-like protein family complex |
| N | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CA O 310 |
| Chain | Residue |
| O | U2 |
| O | U3 |
| O | U4 |
| O | U5 |
| O | U6 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CA T 320 |
| Chain | Residue |
| T | U2 |
| T | U3 |
| T | U5 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA P 330 |
| Chain | Residue |
| P | U3 |
| P | U5 |
| P | U6 |
| P | U2 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA S 340 |
| Chain | Residue |
| S | U2 |
| S | U3 |
| S | U5 |
| S | U6 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA U 370 |
| Chain | Residue |
| U | U2 |
| U | U3 |
| U | U5 |
| U | U6 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA Q 380 |
| Chain | Residue |
| Q | U2 |
| Q | U3 |
| Q | U5 |
| Q | U6 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA R 390 |
| Chain | Residue |
| R | U2 |
| R | U3 |
| R | U5 |
| R | U6 |
| site_id | AC8 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE U A 410 |
| Chain | Residue |
| A | HIS137 |
| A | ASN139 |
| A | ARG163 |
| A | GLY164 |
| A | ASP165 |
| B | ARG263 |
| B | U411 |
| G | U416 |
| G | LEU738 |
| site_id | AC9 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE U B 411 |
| Chain | Residue |
| A | LEU138 |
| A | U410 |
| B | HIS237 |
| B | ASN239 |
| B | ARG263 |
| B | GLY264 |
| B | ASP265 |
| C | HOH120 |
| C | U412 |
| site_id | BC1 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE U C 412 |
| Chain | Residue |
| B | ILE236 |
| B | LEU238 |
| B | U411 |
| C | HOH120 |
| C | HIS337 |
| C | ASN339 |
| C | ARG363 |
| C | GLY364 |
| C | ASP365 |
| D | ARG463 |
| D | U476 |
| site_id | BC2 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE U D 476 |
| Chain | Residue |
| C | HOH133 |
| C | LEU338 |
| C | U412 |
| D | HIS437 |
| D | ASN439 |
| D | ARG463 |
| D | GLY464 |
| D | ASP465 |
| E | U414 |
| E | ARG563 |
| site_id | BC3 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE U E 414 |
| Chain | Residue |
| D | HOH9 |
| D | HIS437 |
| D | LEU438 |
| D | U476 |
| E | ASN539 |
| E | ARG563 |
| E | ASP565 |
| F | U415 |
| F | ARG663 |
| site_id | BC4 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE U F 415 |
| Chain | Residue |
| E | HOH180 |
| E | U414 |
| E | HIS537 |
| E | LEU538 |
| F | HIS637 |
| F | ASN639 |
| F | ARG663 |
| F | GLY664 |
| F | ASP665 |
| G | U416 |
| G | ARG763 |
| site_id | BC5 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE U G 416 |
| Chain | Residue |
| A | U410 |
| F | U415 |
| F | LEU638 |
| G | HIS737 |
| G | ASN739 |
| G | ARG763 |
| G | ASP765 |
| site_id | BC6 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE U H 417 |
| Chain | Residue |
| I | U418 |
| M | U423 |
| N | LEU738 |
| H | HIS137 |
| H | ASN139 |
| H | ARG163 |
| H | ASP165 |
| I | ARG263 |
| site_id | BC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE U I 418 |
| Chain | Residue |
| H | LEU138 |
| H | U417 |
| I | HIS237 |
| I | ASN239 |
| I | ARG263 |
| I | ASP265 |
| J | ARG363 |
| J | U419 |
| site_id | BC8 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE U J 419 |
| Chain | Residue |
| I | LEU238 |
| I | U418 |
| I | HOH425 |
| J | ASN339 |
| J | ARG363 |
| J | GLY364 |
| J | ASP365 |
| K | ARG463 |
| K | U476 |
| site_id | BC9 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE U K 476 |
| Chain | Residue |
| J | HOH255 |
| J | LEU338 |
| J | U419 |
| K | HIS437 |
| K | ASN439 |
| K | ARG463 |
| K | GLY464 |
| K | ASP465 |
| L | U421 |
| L | ARG563 |
| site_id | CC1 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE U L 421 |
| Chain | Residue |
| K | HOH220 |
| K | HIS437 |
| K | LEU438 |
| K | U476 |
| L | HIS537 |
| L | ASN539 |
| L | ARG563 |
| L | ASP565 |
| M | U422 |
| M | ARG663 |
| site_id | CC2 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE U M 422 |
| Chain | Residue |
| L | U421 |
| L | LEU538 |
| M | HOH32 |
| M | U423 |
| M | HIS637 |
| M | ASN639 |
| M | ARG663 |
| M | ASP665 |
| site_id | CC3 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE U M 423 |
| Chain | Residue |
| H | U417 |
| M | U422 |
| M | LYS622 |
| M | LEU638 |
| M | ASP665 |
| N | HIS737 |
| N | ASN739 |
| N | ARG763 |
| N | ASP765 |
