1M5R
Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006304 | biological_process | DNA modification |
| A | 0016757 | molecular_function | glycosyltransferase activity |
| A | 0019049 | biological_process | virus-mediated perturbation of host defense response |
| A | 0033821 | molecular_function | DNA beta-glucosyltransferase activity |
| A | 0052170 | biological_process | symbiont-mediated suppression of host innate immune response |
| A | 0099018 | biological_process | symbiont-mediated evasion of host restriction-modification system |
| B | 0006304 | biological_process | DNA modification |
| B | 0016757 | molecular_function | glycosyltransferase activity |
| B | 0019049 | biological_process | virus-mediated perturbation of host defense response |
| B | 0033821 | molecular_function | DNA beta-glucosyltransferase activity |
| B | 0052170 | biological_process | symbiont-mediated suppression of host innate immune response |
| B | 0099018 | biological_process | symbiont-mediated evasion of host restriction-modification system |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 21 |
| Details | BINDING SITE FOR RESIDUE UDP A 400 |
| Chain | Residue |
| A | VAL18 |
| A | MET240 |
| A | VAL243 |
| A | TYR261 |
| A | ARG269 |
| A | GLU272 |
| A | TRS500 |
| A | HOH1009 |
| A | HOH1019 |
| A | HOH1021 |
| A | HOH1023 |
| A | GLY188 |
| A | HOH1074 |
| A | HOH1089 |
| A | SER189 |
| A | ARG191 |
| A | ARG195 |
| A | PHE213 |
| A | GLY214 |
| A | LYS237 |
| A | ILE238 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE TRS A 500 |
| Chain | Residue |
| A | GLU22 |
| A | THR99 |
| A | ASP100 |
| A | ARG191 |
| A | UDP400 |
| A | HOH1008 |
| A | HOH1021 |
| A | HOH1172 |
| A | HOH1199 |
| site_id | AC3 |
| Number of Residues | 22 |
| Details | BINDING SITE FOR RESIDUE UDP B 401 |
| Chain | Residue |
| B | VAL18 |
| B | GLY188 |
| B | SER189 |
| B | ARG191 |
| B | ARG195 |
| B | PHE213 |
| B | GLY214 |
| B | LYS237 |
| B | ILE238 |
| B | MET240 |
| B | VAL243 |
| B | TYR261 |
| B | LEU268 |
| B | ARG269 |
| B | GLU272 |
| B | TRS501 |
| B | HOH2001 |
| B | HOH2002 |
| B | HOH2003 |
| B | HOH2004 |
| B | HOH2038 |
| B | HOH2081 |
| site_id | AC4 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE TRS B 501 |
| Chain | Residue |
| B | GLU22 |
| B | THR99 |
| B | ASP100 |
| B | UDP401 |
| B | HOH2004 |
| B | HOH2036 |
| B | HOH2115 |
| B | HOH2217 |
| site_id | AC5 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE TRS A 501 |
| Chain | Residue |
| A | GLU340 |
| A | TRP341 |
| A | ALA344 |
| A | HOH1121 |
| A | HOH1122 |
| A | HOH1260 |
| A | HOH1380 |
| site_id | AC6 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE TRS B 502 |
| Chain | Residue |
| B | ASN57 |
| B | TYR59 |
| B | TYR90 |
| B | LYS91 |
| B | SER92 |
| B | HOH2012 |
| B | HOH2026 |
| B | HOH2195 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE TRS B 503 |
| Chain | Residue |
| B | MET242 |
| B | GLN249 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MPD A 502 |
| Chain | Residue |
| A | ARG291 |
| A | THR334 |
| A | HOH1078 |
| A | HOH1127 |
| A | HOH1252 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MPD B 504 |
| Chain | Residue |
| B | LYS180 |
| B | LEU182 |
| B | ASP183 |
| B | ASN209 |
| site_id | BC1 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE MPD B 505 |
| Chain | Residue |
| A | GLY45 |
| A | VAL46 |
| B | TYR159 |
| B | ARG291 |
| B | HOH2205 |
| B | HOH2288 |
| B | HOH2301 |
| B | HOH2378 |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1c3j |
| Chain | Residue | Details |
| A | GLU22 | |
| A | ASP100 |
| site_id | CSA2 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1c3j |
| Chain | Residue | Details |
| B | GLU22 | |
| B | ASP100 |
| site_id | MCSA1 |
| Number of Residues | 4 |
| Details | M-CSA 339 |
| Chain | Residue | Details |
| A | GLU22 | hydrogen bond acceptor |
| A | PHE72 | electrostatic stabiliser, steric role |
| A | ASP100 | activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, steric role |
| A | ARG191 | electrostatic stabiliser, hydrogen bond donor, steric role |
| site_id | MCSA2 |
| Number of Residues | 4 |
| Details | M-CSA 339 |
| Chain | Residue | Details |
| B | GLU22 | hydrogen bond acceptor |
| B | PHE72 | electrostatic stabiliser, steric role |
| B | ASP100 | activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, steric role |
| B | ARG191 | electrostatic stabiliser, hydrogen bond donor, steric role |
