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1M34

Nitrogenase Complex From Azotobacter Vinelandii Stabilized By ADP-Tetrafluoroaluminate

Functional Information from GO Data
ChainGOidnamespacecontents
A0005524molecular_functionATP binding
A0009399biological_processnitrogen fixation
A0016163molecular_functionnitrogenase activity
A0016491molecular_functionoxidoreductase activity
A0016612cellular_componentmolybdenum-iron nitrogenase complex
A0046872molecular_functionmetal ion binding
A0051536molecular_functioniron-sulfur cluster binding
B0005524molecular_functionATP binding
B0009399biological_processnitrogen fixation
B0016163molecular_functionnitrogenase activity
B0016491molecular_functionoxidoreductase activity
B0016612cellular_componentmolybdenum-iron nitrogenase complex
B0046872molecular_functionmetal ion binding
B0051536molecular_functioniron-sulfur cluster binding
C0005524molecular_functionATP binding
C0009399biological_processnitrogen fixation
C0016163molecular_functionnitrogenase activity
C0016491molecular_functionoxidoreductase activity
C0016612cellular_componentmolybdenum-iron nitrogenase complex
C0046872molecular_functionmetal ion binding
C0051536molecular_functioniron-sulfur cluster binding
D0005524molecular_functionATP binding
D0009399biological_processnitrogen fixation
D0016163molecular_functionnitrogenase activity
D0016491molecular_functionoxidoreductase activity
D0016612cellular_componentmolybdenum-iron nitrogenase complex
D0046872molecular_functionmetal ion binding
D0051536molecular_functioniron-sulfur cluster binding
E0005524molecular_functionATP binding
E0009399biological_processnitrogen fixation
E0016163molecular_functionnitrogenase activity
E0016491molecular_functionoxidoreductase activity
E0046872molecular_functionmetal ion binding
E0051539molecular_function4 iron, 4 sulfur cluster binding
F0005524molecular_functionATP binding
F0009399biological_processnitrogen fixation
F0016163molecular_functionnitrogenase activity
F0016491molecular_functionoxidoreductase activity
F0046872molecular_functionmetal ion binding
F0051539molecular_function4 iron, 4 sulfur cluster binding
G0005524molecular_functionATP binding
G0009399biological_processnitrogen fixation
G0016163molecular_functionnitrogenase activity
G0016491molecular_functionoxidoreductase activity
G0046872molecular_functionmetal ion binding
G0051539molecular_function4 iron, 4 sulfur cluster binding
H0005524molecular_functionATP binding
H0009399biological_processnitrogen fixation
H0016163molecular_functionnitrogenase activity
H0016491molecular_functionoxidoreductase activity
H0046872molecular_functionmetal ion binding
H0051539molecular_function4 iron, 4 sulfur cluster binding
I0005524molecular_functionATP binding
I0009399biological_processnitrogen fixation
I0016163molecular_functionnitrogenase activity
I0016491molecular_functionoxidoreductase activity
I0016612cellular_componentmolybdenum-iron nitrogenase complex
I0046872molecular_functionmetal ion binding
I0051536molecular_functioniron-sulfur cluster binding
J0005524molecular_functionATP binding
J0009399biological_processnitrogen fixation
J0016163molecular_functionnitrogenase activity
J0016491molecular_functionoxidoreductase activity
J0016612cellular_componentmolybdenum-iron nitrogenase complex
J0046872molecular_functionmetal ion binding
J0051536molecular_functioniron-sulfur cluster binding
K0005524molecular_functionATP binding
K0009399biological_processnitrogen fixation
K0016163molecular_functionnitrogenase activity
K0016491molecular_functionoxidoreductase activity
K0016612cellular_componentmolybdenum-iron nitrogenase complex
K0046872molecular_functionmetal ion binding
K0051536molecular_functioniron-sulfur cluster binding
L0005524molecular_functionATP binding
L0009399biological_processnitrogen fixation
L0016163molecular_functionnitrogenase activity
L0016491molecular_functionoxidoreductase activity
L0016612cellular_componentmolybdenum-iron nitrogenase complex
L0046872molecular_functionmetal ion binding
L0051536molecular_functioniron-sulfur cluster binding
M0005524molecular_functionATP binding
M0009399biological_processnitrogen fixation
M0016163molecular_functionnitrogenase activity
M0016491molecular_functionoxidoreductase activity
M0046872molecular_functionmetal ion binding
M0051539molecular_function4 iron, 4 sulfur cluster binding
N0005524molecular_functionATP binding
N0009399biological_processnitrogen fixation
N0016163molecular_functionnitrogenase activity
N0016491molecular_functionoxidoreductase activity
N0046872molecular_functionmetal ion binding
N0051539molecular_function4 iron, 4 sulfur cluster binding
O0005524molecular_functionATP binding
O0009399biological_processnitrogen fixation
O0016163molecular_functionnitrogenase activity
O0016491molecular_functionoxidoreductase activity
O0046872molecular_functionmetal ion binding
O0051539molecular_function4 iron, 4 sulfur cluster binding
P0005524molecular_functionATP binding
P0009399biological_processnitrogen fixation
P0016163molecular_functionnitrogenase activity
P0016491molecular_functionoxidoreductase activity
P0046872molecular_functionmetal ion binding
P0051539molecular_function4 iron, 4 sulfur cluster binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA D 2099
ChainResidue
BARG108
BGLU109
DASP353
DASP357
DHOH2469

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 2299
ChainResidue
DGLU109
BASP353
BASP357
BHOH2477
DARG108

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG E 3092
ChainResidue
ESER16
EADP3091
EALF3093
EHOH3131
EHOH3132
EHOH3133

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ALF E 3093
ChainResidue
EGLY11
EGLY12
ELYS15
EASP39
ELYS41
ELEU127
EGLY128
EADP3091
EMG3092
EHOH3130
EHOH3131
FLYS10
FGLY11

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG F 3192
ChainResidue
FSER16
FADP3191
FALF3193
FHOH3196
FHOH3197
FHOH3198

site_idAC6
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ALF F 3193
ChainResidue
ELYS10
EGLY11
EHOH3134
FGLY11
FGLY12
FLYS15
FASP39
FLYS41
FGLY128
FADP3191
FMG3192
FHOH3196
FHOH3197

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG G 3292
ChainResidue
GSER16
GADP3291
GALF3293
GHOH3346
GHOH3347
GHOH3348

site_idAC8
Number of Residues12
DetailsBINDING SITE FOR RESIDUE ALF G 3293
ChainResidue
GGLY11
GGLY12
GLYS15
GASP39
GLYS41
GGLY128
GADP3291
GMG3292
GHOH3345
GHOH3347
HLYS10
HGLY11

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG H 3392
ChainResidue
HSER16
HADP3391
HALF3393
HHOH3417
HHOH3418
HHOH3419

site_idBC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE ALF H 3393
ChainResidue
GLYS10
GGLY11
GHOH3349
HGLY11
HGLY12
HLYS15
HASP39
HLYS41
HGLY128
HADP3391
HMG3392
HHOH3418

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA L 4099
ChainResidue
JARG108
JGLU109
JHOH4505
LASP353
LASP357

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA J 4299
ChainResidue
JASP353
JASP357
JHOH4506
LARG108
LGLU109

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG M 5092
ChainResidue
MHOH5154
MSER16
MADP5091
MALF5093
MHOH5152
MHOH5153

site_idBC5
Number of Residues15
DetailsBINDING SITE FOR RESIDUE ALF M 5093
ChainResidue
MGLY11
MGLY12
MLYS15
MASP39
MLYS41
MLEU127
MGLY128
MADP5091
MMG5092
MHOH5151
MHOH5152
MHOH5153
NLYS10
NGLY11
NHOH5202

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG N 5192
ChainResidue
NSER16
NADP5191
NALF5193
NHOH5232
NHOH5233
NHOH5234

site_idBC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE ALF N 5193
ChainResidue
MLYS10
MGLY11
MHOH5102
MHOH5155
NGLY11
NGLY12
NLYS15
NASP39
NLYS41
NLEU127
NGLY128
NADP5191
NMG5192
NHOH5232
NHOH5233

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG O 5292
ChainResidue
OSER16
OADP5291
OALF5293
OHOH5296
OHOH5297
OHOH5298

site_idBC9
Number of Residues12
DetailsBINDING SITE FOR RESIDUE ALF O 5293
ChainResidue
OGLY11
OGLY12
OLYS15
OLYS41
OLEU127
OGLY128
OADP5291
OMG5292
OHOH5294
OHOH5296
PLYS10
PGLY11

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG P 5392
ChainResidue
PSER16
PADP5391
PALF5393
PHOH5396
PHOH5397
PHOH5398

site_idCC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE ALF P 5393
ChainResidue
OLYS10
OGLY11
OASP129
OHOH5394
PGLY11
PGLY12
PLYS15
PLYS41
PGLY128
PADP5391
PMG5392

site_idCC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE HCA A 2094
ChainResidue
AALA65
AGLY95
AGLN191
AGLY424
AILE425
ALYS426
AHIS442
ACFM2096
AHOH2097
AHOH2106
AHOH2113
AHOH2131
AHOH2132
AHOH2138
AHOH2224

site_idCC4
Number of Residues12
DetailsBINDING SITE FOR RESIDUE CFM A 2096
ChainResidue
AARG96
AHIS195
ATYR229
AILE231
ACYS275
AILE355
AGLY356
AGLY357
AARG359
APHE381
AHIS442
AHCA2094

site_idCC5
Number of Residues14
DetailsBINDING SITE FOR RESIDUE CLF B 2098
ChainResidue
ACYS62
ATYR64
AVAL86
ACYS88
ATYR91
ACYS154
AGLY185
BCYS70
BPRO72
BSER92
BCYS95
BTYR98
BCYS153
BSER188

site_idCC6
Number of Residues14
DetailsBINDING SITE FOR RESIDUE HCA C 2294
ChainResidue
CARG96
CGLN191
CGLY424
CILE425
CLYS426
CHIS442
CCFM2296
CHOH2306
CHOH2339
CHOH2379
CHOH2381
CHOH2386
CHOH2397
CHOH2414

site_idCC7
Number of Residues12
DetailsBINDING SITE FOR RESIDUE CFM C 2296
ChainResidue
CARG96
CHIS195
CTYR229
CCYS275
CSER278
CGLY356
CGLY357
CLEU358
CARG359
CPHE381
CHIS442
CHCA2294

site_idCC8
Number of Residues14
DetailsBINDING SITE FOR RESIDUE CLF D 2298
ChainResidue
CCYS62
CTYR64
CPRO85
CVAL86
CCYS88
CCYS154
CGLY185
DCYS70
DPRO72
DSER92
DCYS95
DTYR98
DCYS153
DSER188

site_idCC9
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SF4 E 3090
ChainResidue
ALEU158
BVAL157
ECYS97
EALA98
EGLY99
ECYS132
FCYS97
FALA98
FGLY99
FCYS132

site_idDC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ADP E 3091
ChainResidue
EGLY12
EILE13
EGLY14
ELYS15
ESER16
ETHR17
EASN185
EPRO212
EARG213
EASP214
EVAL217
EGLN218
EGLU221
EGLN236
EMG3092
EALF3093
EHOH3132
FLYS10
FGLU154
FMET156

site_idDC2
Number of Residues24
DetailsBINDING SITE FOR RESIDUE ADP F 3191
ChainResidue
ELYS10
EGLU154
EMET156
FGLY12
FILE13
FGLY14
FLYS15
FSER16
FTHR17
FASN185
FVAL211
FPRO212
FARG213
FASP214
FVAL217
FGLN218
FGLU221
FGLN236
FTYR240
FHOH1505
FMG3192
FALF3193
FHOH3196
FHOH3197

site_idDC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SF4 G 3290
ChainResidue
CLEU158
DVAL157
DILE158
GCYS97
GALA98
GGLY99
GCYS132
HCYS97
HALA98
HGLY99
HCYS132

site_idDC4
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ADP G 3291
ChainResidue
GGLY12
GILE13
GGLY14
GLYS15
GSER16
GTHR17
GASN185
GVAL211
GPRO212
GARG213
GASP214
GGLN218
GGLU221
GGLN236
GMG3292
GALF3293
GHOH3346
GHOH3347
HLYS10
HGLU154
HMET156

site_idDC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ADP H 3391
ChainResidue
GLYS10
GGLU154
GMET156
HGLY12
HILE13
HGLY14
HLYS15
HSER16
HTHR17
HASN185
HPRO212
HARG213
HASP214
HVAL217
HGLN218
HGLU221
HGLN236
HMG3392
HALF3393
HHOH3402
HHOH3417

site_idDC6
Number of Residues17
DetailsBINDING SITE FOR RESIDUE HCA I 4094
ChainResidue
IALA65
IARG96
IGLN191
IGLY424
IILE425
ILYS426
IHIS442
ICFM4096
IHOH4107
IHOH4109
IHOH4147
IHOH4150
IHOH4194
IHOH4204
IHOH4225
IHOH4286
JHOH4361

site_idDC7
Number of Residues11
DetailsBINDING SITE FOR RESIDUE CFM I 4096
ChainResidue
IARG96
IHIS195
ITYR229
ICYS275
IGLY356
IGLY357
ILEU358
IARG359
IPHE381
IHIS442
IHCA4094

site_idDC8
Number of Residues14
DetailsBINDING SITE FOR RESIDUE CLF J 4098
ChainResidue
ICYS62
ITYR64
IPRO85
IVAL86
ICYS88
ICYS154
IGLY185
JCYS70
JPRO72
JSER92
JCYS95
JTYR98
JCYS153
JSER188

site_idDC9
Number of Residues11
DetailsBINDING SITE FOR RESIDUE HCA K 4294
ChainResidue
KALA65
KGLN191
KILE425
KLYS426
KHIS442
KCFM4296
KHOH4299
KHOH4304
KHOH4363
KHOH4398
LHOH4368

site_idEC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE CFM K 4296
ChainResidue
KARG96
KHIS195
KTYR229
KCYS275
KGLY356
KGLY357
KLEU358
KARG359
KPHE381
KHIS442
KHCA4294

site_idEC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE CLF L 4298
ChainResidue
KCYS62
KTYR64
KPRO85
KVAL86
KCYS88
KTYR91
KCYS154
KGLY185
LCYS70
LPRO72
LSER92
LCYS95
LTYR98
LCYS153
LSER188

site_idEC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SF4 M 5090
ChainResidue
ILEU158
JVAL157
MCYS97
MALA98
MGLY99
MCYS132
NCYS97
NALA98
NGLY99
NVAL131
NCYS132

site_idEC4
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ADP M 5091
ChainResidue
MGLY12
MILE13
MGLY14
MLYS15
MSER16
MTHR17
MASN185
MPRO212
MARG213
MASP214
MGLN218
MGLU221
MGLN236
MMG5092
MALF5093
MHOH5113
MHOH5152
MHOH5153
NLYS10
NGLU154
NMET156

site_idEC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ADP N 5191
ChainResidue
MLYS10
MGLU154
MMET156
NGLY12
NILE13
NGLY14
NLYS15
NSER16
NTHR17
NASN185
NPRO212
NARG213
NASP214
NGLN218
NGLU221
NGLN236
NMG5192
NALF5193
NHOH5206
NHOH5232
NHOH5233

site_idEC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SF4 O 5290
ChainResidue
KLEU158
LVAL157
OCYS97
OALA98
OGLY99
OCYS132
PCYS97
PALA98
PGLY99
PCYS132

site_idEC7
Number of Residues22
DetailsBINDING SITE FOR RESIDUE ADP O 5291
ChainResidue
OGLY12
OILE13
OGLY14
OLYS15
OSER16
OTHR17
OASN185
OPRO212
OARG213
OASP214
OVAL217
OGLN218
OGLU221
OGLN236
OHOH1451
OMG5292
OALF5293
OHOH5296
PLYS10
PGLU154
PMET155
PMET156

site_idEC8
Number of Residues23
DetailsBINDING SITE FOR RESIDUE ADP P 5391
ChainResidue
OLYS10
OGLU154
OMET156
PGLY12
PILE13
PGLY14
PLYS15
PSER16
PTHR17
PASN185
PVAL211
PPRO212
PARG213
PASP214
PVAL217
PGLN218
PGLU221
PGLN236
PTYR240
PMG5392
PALF5393
PHOH5396
PHOH5397

Functional Information from PROSITE/UniProt
site_idPS00090
Number of Residues15
DetailsNITROGENASE_1_2 Nitrogenases component 1 alpha and beta subunits signature 2. SECpigliGDDIeSV
ChainResidueDetails
ASER152-VAL166
BTHR151-PHE165

site_idPS00692
Number of Residues14
DetailsNIFH_FRXC_2 NifH/frxC family signature 2. DvLGDVVCGGFAmP
ChainResidueDetails
EASP125-PRO138

site_idPS00699
Number of Residues8
DetailsNITROGENASE_1_1 Nitrogenases component 1 alpha and beta subunits signature 1. ISHGPVGC
ChainResidueDetails
AILE81-CYS88
BTYR88-CYS95

site_idPS00746
Number of Residues13
DetailsNIFH_FRXC_1 NifH/frxC family signature 1. EsGGPepGvGCAG
ChainResidueDetails
EGLU87-GLY99

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBINDING:
ChainResidueDetails
EGLY9
HGLY9
HCYS97
HCYS132
MGLY9
MCYS97
MCYS132
NGLY9
NCYS97
NCYS132
OGLY9
ECYS97
OCYS97
OCYS132
PGLY9
PCYS97
PCYS132
ECYS132
FGLY9
FCYS97
FCYS132
GGLY9
GCYS97
GCYS132

site_idSWS_FT_FI2
Number of Residues8
DetailsMOD_RES: ADP-ribosylarginine; by dinitrogenase reductase ADP-ribosyltransferase => ECO:0000250
ChainResidueDetails
EARG100
FARG100
GARG100
HARG100
MARG100
NARG100
OARG100
PARG100

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1f48
ChainResidueDetails
ELYS15
EGLY12

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1f48
ChainResidueDetails
FLYS15
FGLY12

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1f48
ChainResidueDetails
GLYS15
GGLY12

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1f48
ChainResidueDetails
HLYS15
HGLY12

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1f48
ChainResidueDetails
MLYS15
MGLY12

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1f48
ChainResidueDetails
NLYS15
NGLY12

site_idCSA7
Number of Residues2
DetailsAnnotated By Reference To The Literature 1f48
ChainResidueDetails
OLYS15
OGLY12

site_idCSA8
Number of Residues2
DetailsAnnotated By Reference To The Literature 1f48
ChainResidueDetails
PLYS15
PGLY12

site_idMCSA1
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
ELYS10electrostatic stabiliser, hydrogen bond donor
ELYS15electrostatic stabiliser, hydrogen bond donor
ELYS41electrostatic stabiliser, hydrogen bond donor
EASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA2
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
FLYS10electrostatic stabiliser, hydrogen bond donor
FLYS15electrostatic stabiliser, hydrogen bond donor
FLYS41electrostatic stabiliser, hydrogen bond donor
FASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA3
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
GLYS10electrostatic stabiliser, hydrogen bond donor
GLYS15electrostatic stabiliser, hydrogen bond donor
GLYS41electrostatic stabiliser, hydrogen bond donor
GASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA4
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
HLYS10electrostatic stabiliser, hydrogen bond donor
HLYS15electrostatic stabiliser, hydrogen bond donor
HLYS41electrostatic stabiliser, hydrogen bond donor
HASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA5
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
MLYS10electrostatic stabiliser, hydrogen bond donor
MLYS15electrostatic stabiliser, hydrogen bond donor
MLYS41electrostatic stabiliser, hydrogen bond donor
MASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA6
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
NLYS10electrostatic stabiliser, hydrogen bond donor
NLYS15electrostatic stabiliser, hydrogen bond donor
NLYS41electrostatic stabiliser, hydrogen bond donor
NASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA7
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
OLYS10electrostatic stabiliser, hydrogen bond donor
OLYS15electrostatic stabiliser, hydrogen bond donor
OLYS41electrostatic stabiliser, hydrogen bond donor
OASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA8
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
PLYS10electrostatic stabiliser, hydrogen bond donor
PLYS15electrostatic stabiliser, hydrogen bond donor
PLYS41electrostatic stabiliser, hydrogen bond donor
PASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

224931

PDB entries from 2024-09-11

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