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1LW3

Crystal Structure of Myotubularin-related protein 2 complexed with phosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0002091biological_processnegative regulation of receptor internalization
A0004438molecular_functionphosphatidylinositol-3-phosphate phosphatase activity
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005768cellular_componentendosome
A0005774cellular_componentvacuolar membrane
A0005829cellular_componentcytosol
A0006629biological_processlipid metabolic process
A0006661biological_processphosphatidylinositol biosynthetic process
A0008021cellular_componentsynaptic vesicle
A0014069cellular_componentpostsynaptic density
A0016020cellular_componentmembrane
A0016311biological_processdephosphorylation
A0016787molecular_functionhydrolase activity
A0030424cellular_componentaxon
A0030425cellular_componentdendrite
A0031642biological_processnegative regulation of myelination
A0031901cellular_componentearly endosome membrane
A0032288biological_processmyelin assembly
A0042552biological_processmyelination
A0042802molecular_functionidentical protein binding
A0042995cellular_componentcell projection
A0043197cellular_componentdendritic spine
A0043231cellular_componentintracellular membrane-bounded organelle
A0045806biological_processnegative regulation of endocytosis
A0046488biological_processphosphatidylinositol metabolic process
A0046856biological_processphosphatidylinositol dephosphorylation
A0048471cellular_componentperinuclear region of cytoplasm
A0048666biological_processneuron development
A0052629molecular_functionphosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
A0052866molecular_functionphosphatidylinositol phosphate phosphatase activity
A0060304biological_processregulation of phosphatidylinositol dephosphorylation
A0070062cellular_componentextracellular exosome
A0090394biological_processnegative regulation of excitatory postsynaptic potential
A0097060cellular_componentsynaptic membrane
A0097062biological_processdendritic spine maintenance
A0106018molecular_functionphosphatidylinositol-3,5-bisphosphate phosphatase activity
A2000643biological_processpositive regulation of early endosome to late endosome transport
A2000645biological_processnegative regulation of receptor catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 A 655
ChainResidue
ASER417
ASER418
AASP419
AGLY420
ATRP421
AASP422
AARG423
AHOH1001

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 A 656
ChainResidue
ATRP421
AARG463
AASP475
AHOH1320
AASP419

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A 657
ChainResidue
AARG322
AASN326
AASN330
AASN355
ASER418
AARG423
AHOH1130

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Phosphocysteine intermediate => ECO:0000269|PubMed:14690594, ECO:0000269|PubMed:16410353
ChainResidueDetails
ASER417

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000305|PubMed:16410353, ECO:0007744|PDB:1ZSQ
ChainResidueDetails
AASN330
AARG463
AASN355
AILE356
ASER418
AASP419
AGLY420
ATRP421
AASP422
AARG423

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000305|PubMed:16410353, ECO:0007744|PDB:1ZVR
ChainResidueDetails
AARG459

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q9Z2D1
ChainResidueDetails
ASER6
ASER9

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:21372139, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332
ChainResidueDetails
ASER58

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PDB entries from 2024-10-09

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