Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1KZU

INTEGRAL MEMBRANE PERIPHERAL LIGHT HARVESTING COMPLEX FROM RHODOPSEUDOMONAS ACIDOPHILA STRAIN 10050

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005886	cellular_component	plasma membrane
A	0016020	cellular_component	membrane
A	0016168	molecular_function	chlorophyll binding
A	0019684	biological_process	photosynthesis, light reaction
A	0019866	cellular_component	organelle inner membrane
A	0030076	cellular_component	light-harvesting complex
A	0030077	cellular_component	plasma membrane light-harvesting complex
A	0042314	molecular_function	bacteriochlorophyll binding
A	0046872	molecular_function	metal ion binding
B	0005886	cellular_component	plasma membrane
B	0016020	cellular_component	membrane
B	0016168	molecular_function	chlorophyll binding
B	0019684	biological_process	photosynthesis, light reaction
B	0030076	cellular_component	light-harvesting complex
B	0030077	cellular_component	plasma membrane light-harvesting complex
B	0042314	molecular_function	bacteriochlorophyll binding
B	0046872	molecular_function	metal ion binding
D	0005886	cellular_component	plasma membrane
D	0016020	cellular_component	membrane
D	0016168	molecular_function	chlorophyll binding
D	0019684	biological_process	photosynthesis, light reaction
D	0019866	cellular_component	organelle inner membrane
D	0030076	cellular_component	light-harvesting complex
D	0030077	cellular_component	plasma membrane light-harvesting complex
D	0042314	molecular_function	bacteriochlorophyll binding
D	0046872	molecular_function	metal ion binding
E	0005886	cellular_component	plasma membrane
E	0016020	cellular_component	membrane
E	0016168	molecular_function	chlorophyll binding
E	0019684	biological_process	photosynthesis, light reaction
E	0030076	cellular_component	light-harvesting complex
E	0030077	cellular_component	plasma membrane light-harvesting complex
E	0042314	molecular_function	bacteriochlorophyll binding
E	0046872	molecular_function	metal ion binding
G	0005886	cellular_component	plasma membrane
G	0016020	cellular_component	membrane
G	0016168	molecular_function	chlorophyll binding
G	0019684	biological_process	photosynthesis, light reaction
G	0019866	cellular_component	organelle inner membrane
G	0030076	cellular_component	light-harvesting complex
G	0030077	cellular_component	plasma membrane light-harvesting complex
G	0042314	molecular_function	bacteriochlorophyll binding
G	0046872	molecular_function	metal ion binding
H	0005886	cellular_component	plasma membrane
H	0016020	cellular_component	membrane
H	0016168	molecular_function	chlorophyll binding
H	0019684	biological_process	photosynthesis, light reaction
H	0030076	cellular_component	light-harvesting complex
H	0030077	cellular_component	plasma membrane light-harvesting complex
H	0042314	molecular_function	bacteriochlorophyll binding
H	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	16
Details	BINDING SITE FOR RESIDUE RG1 B 42

Chain	Residue
A	VAL23
A	ILE26
A	BCL56
B	LEU3
B	GLN7
B	LEU11
B	TYR14
B	GLY18
B	THR19
B	BCL43
D	TRP45
D	BCL55
G	GLN3
G	THR8
G	BCL56
H	BCL43

site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE RG1 A 54

Chain	Residue
A	TYR44
A	BCL55
B	ALA29
B	LEU32
B	ALA36
H	BCL43

site_id	AC3
Number of Residues	16
Details	BINDING SITE FOR RESIDUE RG1 E 42

Chain	Residue
A	GLN3
A	THR8
A	BCL56
B	BCL43
D	VAL23
D	ILE26
D	BCL56
E	LEU3
E	GLN7
E	LEU11
E	TYR14
E	GLY18
E	THR19
E	BCL43
G	TRP45
G	BCL55

site_id	AC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE RG1 D 54

Chain	Residue
B	BCL43
D	TYR44
D	BCL55
E	ALA29
E	LEU32
E	ALA36

site_id	AC5
Number of Residues	16
Details	BINDING SITE FOR RESIDUE RG1 H 42

Chain	Residue
A	TRP45
A	BCL55
D	GLN3
D	THR8
D	BCL56
E	BCL43
G	VAL23
G	ILE26
G	BCL56
H	LEU3
H	GLN7
H	LEU11
H	TYR14
H	GLY18
H	THR19
H	BCL43

site_id	AC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE RG1 G 54

Chain	Residue
E	BCL43
G	TYR44
G	BCL55
H	ALA29
H	LEU32
H	ALA36

site_id	AC7
Number of Residues	15
Details	BINDING SITE FOR RESIDUE BCL A 55

Chain	Residue
A	THR24
A	ALA27
A	HIS31
A	TRP45
A	RG154
B	PHE22
B	LEU25
B	ALA26
B	ALA29
B	HIS30
B	BCL43
G	VAL10
G	BCL56
H	RG142
H	BCL43

site_id	AC8
Number of Residues	19
Details	BINDING SITE FOR RESIDUE BCL B 43

Chain	Residue
A	VAL23
A	ALA27
A	VAL30
A	HIS31
A	ILE34
A	BCL55
A	BCL56
B	THR19
B	PHE22
B	ALA26
B	HIS30
B	TRP39
B	RG142
D	TYR44
D	TRP45
D	RG154
D	BCL55
E	PHE22
E	RG142

site_id	AC9
Number of Residues	13
Details	BINDING SITE FOR RESIDUE BCL A 56

Chain	Residue
A	FME1
A	ASN2
A	HOH57
B	ILE16
B	THR19
B	ARG20
B	HIS30
B	TRP39
B	RG142
B	BCL43
D	BCL55
E	GLY18
E	RG142

site_id	BB
Number of Residues	2
Details	B800 BACTERIOCHLOROPHYLL COORDINATING RESIDUES.

Chain	Residue
A	FME1
B	ARG20

site_id	BBA
Number of Residues	2
Details	B850 BACTERIOCHLOROPHYLL COORDINATING RESIDUES.

Chain	Residue
A	HIS31
A	TRP45

site_id	BBB
Number of Residues	2
Details	B850 BACTERIOCHLOROPHYLL COORDINATING RESIDUES.

Chain	Residue
B	HIS30
A	TYR44

site_id	BC1
Number of Residues	15
Details	BINDING SITE FOR RESIDUE BCL D 55

Chain	Residue
A	VAL10
A	BCL56
B	RG142
B	BCL43
D	THR24
D	ALA27
D	HIS31
D	TRP45
D	RG154
E	PHE22
E	LEU25
E	ALA26
E	ALA29
E	HIS30
E	BCL43

site_id	BC2
Number of Residues	19
Details	BINDING SITE FOR RESIDUE BCL E 43

Chain	Residue
D	VAL23
D	ALA27
D	VAL30
D	HIS31
D	ILE34
D	BCL55
D	BCL56
E	THR19
E	PHE22
E	ALA26
E	HIS30
E	TRP39
E	RG142
G	TYR44
G	TRP45
G	RG154
G	BCL55
H	PHE22
H	RG142

site_id	BC3
Number of Residues	13
Details	BINDING SITE FOR RESIDUE BCL D 56

Chain	Residue
D	FME1
D	ASN2
D	HOH57
E	ILE16
E	THR19
E	ARG20
E	HIS30
E	TRP39
E	RG142
E	BCL43
G	BCL55
H	GLY18
H	RG142

site_id	BC4
Number of Residues	15
Details	BINDING SITE FOR RESIDUE BCL G 55

Chain	Residue
D	VAL10
D	BCL56
E	RG142
E	BCL43
G	THR24
G	ALA27
G	HIS31
G	TRP45
G	RG154
H	PHE22
H	LEU25
H	ALA26
H	ALA29
H	HIS30
H	BCL43

site_id	BC5
Number of Residues	19
Details	BINDING SITE FOR RESIDUE BCL H 43

Chain	Residue
A	TYR44
A	TRP45
A	RG154
A	BCL55
B	PHE22
B	RG142
G	VAL23
G	ALA27
G	VAL30
G	HIS31
G	ILE34
G	BCL55
G	BCL56
H	THR19
H	PHE22
H	ALA26
H	HIS30
H	TRP39
H	RG142

site_id	BC6
Number of Residues	13
Details	BINDING SITE FOR RESIDUE BCL G 56

Chain	Residue
A	BCL55
B	GLY18
B	RG142
G	FME1
G	ASN2
G	HOH57
H	ILE16
H	THR19
H	ARG20
H	HIS30
H	TRP39
H	RG142
H	BCL43

site_id	EE
Number of Residues	2
Details	B800 BACTERIOCHLOROPHYLL COORDINATING RESIDUES.

Chain	Residue
D	FME1
E	ARG20

site_id	EEA
Number of Residues	2
Details	B850 BACTERIOCHLOROPHYLL COORDINATING RESIDUES.

Chain	Residue
D	TRP45
D	HIS31

site_id	EEB
Number of Residues	2
Details	B850 BACTERIOCHLOROPHYLL COORDINATING RESIDUES.

Chain	Residue
E	HIS30
D	TYR44

site_id	HH
Number of Residues	2
Details	B800 BACTERIOCHLOROPHYLL COORDINATING RESIDUES.

Chain	Residue
G	FME1
H	ARG20

site_id	HHA
Number of Residues	2
Details	B850 BACTERIOCHLOROPHYLL COORDINATING RESIDUES.

Chain	Residue
G	HIS31
G	TRP45

site_id	HHB
Number of Residues	2
Details	B850 BACTERIOCHLOROPHYLL COORDINATING RESIDUES.

Chain	Residue
H	HIS30
G	TYR44

Functional Information from PROSITE/UniProt

site_id	PS00968
Number of Residues	17
Details	ANTENNA_COMP_ALPHA Antenna complexes alpha subunits signature. ViAIlVHlaiLSHt..TWF

Chain	Residue	Details
A	VAL25-PHE41

site_id	PS00969
Number of Residues	32
Details	ANTENNA_COMP_BETA Antenna complexes beta subunits signature. QseelHkyvidGtrvFlglAlvAHflafsatP

Chain	Residue	Details
B	GLN7-PRO38

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	123
Details	Transmembrane: {"description":"Helical"}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	3
Details	Binding site: {"description":"axial binding residue"}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	39
Details	Topological domain: {"description":"Cytoplasmic"}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	12
Details	Topological domain: {"description":"Periplasmic"}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	6
Details	Binding site: {"description":"axial binding residue","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)