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1KNY

KANAMYCIN NUCLEOTIDYLTRANSFERASE

Functional Information from GO Data
ChainGOidnamespacecontents
A0016740molecular_functiontransferase activity
A0016779molecular_functionnucleotidyltransferase activity
A0046677biological_processresponse to antibiotic
B0016740molecular_functiontransferase activity
B0016779molecular_functionnucleotidyltransferase activity
B0046677biological_processresponse to antibiotic
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 603
ChainResidue
ASER39
AASP50
AGLU52
AAPC556

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 604
ChainResidue
BSER39
BASP50
BGLU52
BAPC557

site_idAC3
Number of Residues19
DetailsBINDING SITE FOR RESIDUE APC A 556
ChainResidue
ASER39
AARG42
ASER49
AASP50
AGLU52
ALEU98
ATHR99
AGLN102
ATHR186
ATHR187
ASER188
AMG603
AHOH608
AHOH611
AHOH631
BGLU145
BLYS149
BKAN559
AGLY38

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE APC B 557
ChainResidue
AGLU145
ALYS149
AKAN558
BTYR37
BGLY38
BSER39
BARG42
BSER49
BASP50
BGLU52
BLEU98
BTHR99
BTHR186
BTHR187
BSER188
BMG604
BHOH619

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE KAN A 558
ChainResidue
ASER94
AASP95
AGLU141
AGLU142
AGLU145
BGLU67
BGLU76
BAPC557
BKAN559

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE KAN B 559
ChainResidue
AGLU67
ALYS74
AGLU76
AAPC556
AKAN558
BSER94
BASP95
BGLU141
BGLU145

Catalytic Information from CSA
site_idCSA1
Number of Residues2
Detailsa catalytic site defined by CSA, PubMed 11258909, ChenGoodspeed1999, 7577914
ChainResidueDetails
AGLU145
ALYS149

site_idCSA2
Number of Residues2
Detailsa catalytic site defined by CSA, PubMed 11258909, ChenGoodspeed1999, 7577914
ChainResidueDetails
BGLU145
BLYS149

site_idMCSA1
Number of Residues4
DetailsM-CSA 647
ChainResidueDetails
AASP50metal ligand
AGLU52metal ligand
AGLU145activator, proton acceptor, proton donor
ALYS149electrostatic stabiliser, polar interaction

site_idMCSA2
Number of Residues4
DetailsM-CSA 647
ChainResidueDetails
BASP50metal ligand
BGLU52metal ligand
BGLU145activator, proton acceptor, proton donor
BLYS149electrostatic stabiliser, polar interaction

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PDB entries from 2024-07-17

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