Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1K1D

Crystal structure of D-hydantoinase

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005737	cellular_component	cytoplasm
A	0016787	molecular_function	hydrolase activity
A	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
A	0046872	molecular_function	metal ion binding
B	0005737	cellular_component	cytoplasm
B	0016787	molecular_function	hydrolase activity
B	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
B	0046872	molecular_function	metal ion binding
C	0005737	cellular_component	cytoplasm
C	0016787	molecular_function	hydrolase activity
C	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
C	0046872	molecular_function	metal ion binding
D	0005737	cellular_component	cytoplasm
D	0016787	molecular_function	hydrolase activity
D	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
D	0046872	molecular_function	metal ion binding
E	0005737	cellular_component	cytoplasm
E	0016787	molecular_function	hydrolase activity
E	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
E	0046872	molecular_function	metal ion binding
F	0005737	cellular_component	cytoplasm
F	0016787	molecular_function	hydrolase activity
F	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
F	0046872	molecular_function	metal ion binding
G	0005737	cellular_component	cytoplasm
G	0016787	molecular_function	hydrolase activity
G	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
G	0046872	molecular_function	metal ion binding
H	0005737	cellular_component	cytoplasm
H	0016787	molecular_function	hydrolase activity
H	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
H	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN A 501

Chain	Residue
A	KCX150
A	HIS183
A	HIS239
A	ZN502

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN A 502

Chain	Residue
A	HIS58
A	HIS60
A	KCX150
A	ASP315
A	ZN501

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN B 501

Chain	Residue
B	KCX150
B	HIS183
B	HIS239
B	ZN502

site_id	AC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN B 502

Chain	Residue
B	HIS58
B	HIS60
B	KCX150
B	ASP315
B	ZN501

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN C 501

Chain	Residue
C	KCX150
C	HIS183
C	HIS239
C	ZN502

site_id	AC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN C 502

Chain	Residue
C	HIS58
C	HIS60
C	KCX150
C	ASP315
C	ZN501

site_id	AC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN D 501

Chain	Residue
D	KCX150
D	HIS183
D	HIS239
D	ZN502

site_id	AC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN D 502

Chain	Residue
D	HIS58
D	HIS60
D	KCX150
D	ASP315
D	ZN501

site_id	AC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN E 501

Chain	Residue
E	KCX150
E	HIS183
E	HIS239
E	ZN502

site_id	BC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN E 502

Chain	Residue
E	HIS58
E	HIS60
E	KCX150
E	ASP315
E	ZN501

site_id	BC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN F 501

Chain	Residue
F	KCX150
F	HIS183
F	HIS239
F	ZN502

site_id	BC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN F 502

Chain	Residue
F	HIS58
F	HIS60
F	KCX150
F	ASP315
F	ZN501

site_id	BC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN G 501

Chain	Residue
G	KCX150
G	HIS183
G	HIS239
G	ZN502

site_id	BC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN G 502

Chain	Residue
G	HIS58
G	HIS60
G	KCX150
G	ASP315
G	ZN501

site_id	BC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN H 501

Chain	Residue
H	KCX150
H	HIS183
H	HIS239
H	ZN502

site_id	BC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN H 502

Chain	Residue
H	HIS58
H	HIS60
H	KCX150
H	ASP315
H	ZN501

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	40
Details	BINDING: BINDING => ECO:0000269\|PubMed:12135362, ECO:0007744\|PDB:1K1D

Chain	Residue	Details
A	HIS58
B	ASP315
C	HIS58
C	HIS60
C	HIS183
C	HIS239
C	ASP315
D	HIS58
D	HIS60
D	HIS183
D	HIS239
A	HIS60
D	ASP315
E	HIS58
E	HIS60
E	HIS183
E	HIS239
E	ASP315
F	HIS58
F	HIS60
F	HIS183
F	HIS239
A	HIS183
F	ASP315
G	HIS58
G	HIS60
G	HIS183
G	HIS239
G	ASP315
H	HIS58
H	HIS60
H	HIS183
H	HIS239
A	HIS239
H	ASP315
A	ASP315
B	HIS58
B	HIS60
B	HIS183
B	HIS239

site_id	SWS_FT_FI2
Number of Residues	8
Details	BINDING: via carbamate group => ECO:0000269\|PubMed:12135362, ECO:0007744\|PDB:1K1D

Chain	Residue	Details
A	KCX150
B	KCX150
C	KCX150
D	KCX150
E	KCX150
F	KCX150
G	KCX150
H	KCX150

site_id	SWS_FT_FI3
Number of Residues	24
Details	BINDING: BINDING => ECO:0000250\|UniProtKB:Q9P903

Chain	Residue	Details
A	TYR155
D	TYR155
D	SER288
D	ASN337
E	TYR155
E	SER288
E	ASN337
F	TYR155
F	SER288
F	ASN337
G	TYR155
A	SER288
G	SER288
G	ASN337
H	TYR155
H	SER288
H	ASN337
A	ASN337
B	TYR155
B	SER288
B	ASN337
C	TYR155
C	SER288
C	ASN337

site_id	SWS_FT_FI4
Number of Residues	8
Details	MOD_RES: N6-carboxylysine => ECO:0000269\|PubMed:12135362

Chain	Residue	Details
A	KCX150
B	KCX150
C	KCX150
D	KCX150
E	KCX150
F	KCX150
G	KCX150
H	KCX150

Catalytic Information from CSA

site_id	CSA1
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
A	ASP315

site_id	CSA2
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
B	ASP315

site_id	CSA3
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
C	ASP315

site_id	CSA4
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
D	ASP315

site_id	CSA5
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
E	ASP315

site_id	CSA6
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
F	ASP315

site_id	CSA7
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
G	ASP315

site_id	CSA8
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
H	ASP315

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)