Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1K1D

Crystal structure of D-hydantoinase

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0016787	molecular_function	hydrolase activity
A	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
A	0016812	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
A	0046872	molecular_function	metal ion binding
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0016787	molecular_function	hydrolase activity
B	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
B	0016812	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
B	0046872	molecular_function	metal ion binding
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0016787	molecular_function	hydrolase activity
C	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
C	0016812	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
C	0046872	molecular_function	metal ion binding
D	0005737	cellular_component	cytoplasm
D	0005829	cellular_component	cytosol
D	0016787	molecular_function	hydrolase activity
D	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
D	0016812	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
D	0046872	molecular_function	metal ion binding
E	0005737	cellular_component	cytoplasm
E	0005829	cellular_component	cytosol
E	0016787	molecular_function	hydrolase activity
E	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
E	0016812	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
E	0046872	molecular_function	metal ion binding
F	0005737	cellular_component	cytoplasm
F	0005829	cellular_component	cytosol
F	0016787	molecular_function	hydrolase activity
F	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
F	0016812	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
F	0046872	molecular_function	metal ion binding
G	0005737	cellular_component	cytoplasm
G	0005829	cellular_component	cytosol
G	0016787	molecular_function	hydrolase activity
G	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
G	0016812	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
G	0046872	molecular_function	metal ion binding
H	0005737	cellular_component	cytoplasm
H	0005829	cellular_component	cytosol
H	0016787	molecular_function	hydrolase activity
H	0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
H	0016812	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
H	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN A 501

Chain	Residue
A	KCX150
A	HIS183
A	HIS239
A	ZN502

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN A 502

Chain	Residue
A	HIS58
A	HIS60
A	KCX150
A	ASP315
A	ZN501

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN B 501

Chain	Residue
B	KCX150
B	HIS183
B	HIS239
B	ZN502

site_id	AC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN B 502

Chain	Residue
B	HIS58
B	HIS60
B	KCX150
B	ASP315
B	ZN501

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN C 501

Chain	Residue
C	KCX150
C	HIS183
C	HIS239
C	ZN502

site_id	AC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN C 502

Chain	Residue
C	HIS58
C	HIS60
C	KCX150
C	ASP315
C	ZN501

site_id	AC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN D 501

Chain	Residue
D	KCX150
D	HIS183
D	HIS239
D	ZN502

site_id	AC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN D 502

Chain	Residue
D	HIS58
D	HIS60
D	KCX150
D	ASP315
D	ZN501

site_id	AC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN E 501

Chain	Residue
E	KCX150
E	HIS183
E	HIS239
E	ZN502

site_id	BC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN E 502

Chain	Residue
E	HIS58
E	HIS60
E	KCX150
E	ASP315
E	ZN501

site_id	BC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN F 501

Chain	Residue
F	KCX150
F	HIS183
F	HIS239
F	ZN502

site_id	BC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN F 502

Chain	Residue
F	HIS58
F	HIS60
F	KCX150
F	ASP315
F	ZN501

site_id	BC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN G 501

Chain	Residue
G	KCX150
G	HIS183
G	HIS239
G	ZN502

site_id	BC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN G 502

Chain	Residue
G	HIS58
G	HIS60
G	KCX150
G	ASP315
G	ZN501

site_id	BC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN H 501

Chain	Residue
H	KCX150
H	HIS183
H	HIS239
H	ZN502

site_id	BC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN H 502

Chain	Residue
H	HIS58
H	HIS60
H	KCX150
H	ASP315
H	ZN501

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	40
Details	Binding site: {"evidences":[{"source":"PubMed","id":"12135362","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1K1D","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	8
Details	Binding site: {"description":"via carbamate group","evidences":[{"source":"PubMed","id":"12135362","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1K1D","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	24
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"Q9P903","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	8
Details	Modified residue: {"description":"N6-carboxylysine","evidences":[{"source":"PubMed","id":"12135362","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

Catalytic Information from CSA

site_id	CSA1
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
A	ASP315

site_id	CSA2
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
B	ASP315

site_id	CSA3
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
C	ASP315

site_id	CSA4
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
D	ASP315

site_id	CSA5
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
E	ASP315

site_id	CSA6
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
F	ASP315

site_id	CSA7
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
G	ASP315

site_id	CSA8
Number of Residues	1
Details	Annotated By Reference To The Literature 1j79

Chain	Residue	Details
H	ASP315

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)