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1JTT

Degenerate interfaces in antigen-antibody complexes

Functional Information from GO Data
ChainGOidnamespacecontents
L0003796molecular_functionlysozyme activity
L0005515molecular_functionprotein binding
L0005576cellular_componentextracellular region
L0005615cellular_componentextracellular space
L0005737cellular_componentcytoplasm
L0005783cellular_componentendoplasmic reticulum
L0016231molecular_functionbeta-N-acetylglucosaminidase activity
L0016798molecular_functionhydrolase activity, acting on glycosyl bonds
L0016998biological_processcell wall macromolecule catabolic process
L0031640biological_processkilling of cells of another organism
L0042742biological_processdefense response to bacterium
L0042802molecular_functionidentical protein binding
L0050829biological_processdefense response to Gram-negative bacterium
L0050830biological_processdefense response to Gram-positive bacterium
L0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 301
ChainResidue
AASP99
ATHR101
AGLY119
AASP121
AHOH467
AHOH507

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA L 302
ChainResidue
LARG73
LHOH454
LHOH455
LSER60
LCYS64
LSER72

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA L 304
ChainResidue
LTYR20
LLYS96
LVAL99
LSER100
LFMT406

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA L 305
ChainResidue
LGLU35
LFMT404
LHOH440
LHOH441
LHOH472

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA A 306
ChainResidue
AASN74
AASN77
AHOH415

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 307
ChainResidue
AGLY42
LARG21
LSER100
LASP101
LASN103

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT L 401
ChainResidue
LALA42
LASN44
LARG68
LHOH442

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMT L 402
ChainResidue
LASN65
LGLY67
LARG68
LTHR69
LPRO70
LSER72
LHOH454
LHOH455
LHOH478

site_idAC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT A 403
ChainResidue
AALA6
ATYR94
ATYR95
ACYS96
AGLY124
AGLY126
ATHR127
AHOH419

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT L 404
ChainResidue
ASER105
AHOH471
LGLU35
LVAL109
LALA110
LNA305

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT L 405
ChainResidue
AGLN39
AHOH492
LTYR20
LARG21

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT L 406
ChainResidue
LTYR20
LLYS96
LLYS97
LNA304
LHOH488

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT L 407
ChainResidue
ATYR106
LARG45
LASN46
LTHR47
LHOH470

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT L 408
ChainResidue
LGLY4
LARG5
LCYS6
LGLU7

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT L 409
ChainResidue
AILE29
AHOH505
LARG5

Functional Information from PROSITE/UniProt
site_idPS00128
Number of Residues19
DetailsGLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC
ChainResidueDetails
LCYS76-CYS94

site_idPS00879
Number of Residues17
DetailsODR_DC_2_2 Orn/DAP/Arg decarboxylases family 2 signature 2. Gkereg.VaAINMGGGIT
ChainResidueDetails
AGLY42-THR58

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
LGLU35
LASP52

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING:
ChainResidueDetails
LASP101

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
LGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
LASN46
LASP48
LSER50
LASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
LASN59

219140

PDB entries from 2024-05-01

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