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1JH6

Semi-reduced Cyclic Nucleotide Phosphodiesterase from Arabidopsis thaliana

Functional Information from GO Data
ChainGOidnamespacecontents
A0004112molecular_functioncyclic-nucleotide phosphodiesterase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006388biological_processtRNA splicing, via endonucleolytic cleavage and ligation
A0016787molecular_functionhydrolase activity
B0004112molecular_functioncyclic-nucleotide phosphodiesterase activity
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006388biological_processtRNA splicing, via endonucleolytic cleavage and ligation
B0016787molecular_functionhydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 A 211
ChainResidue
AHIS42
AHOH308
AHOH413
ATHR44
AHIS119
ASER121
ATYR124
AHOH302
AHOH303
AHOH304
AHOH305

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 212
ChainResidue
AARG31
AARG31
AARG31
AARG38
AARG38
AARG38
AHOH393

site_idAC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 B 221
ChainResidue
BHIS42
BTHR44
BHIS119
BSER121
BTYR124
BHOH502
BHOH503
BHOH504
BHOH505
BHOH508
BHOH662

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 222
ChainResidue
BARG31
BARG31
BARG31
BARG38
BARG38
BARG38
BHOH518

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton donor/acceptor
ChainResidueDetails
AHIS42
AHIS119
BHIS42
BHIS119

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING:
ChainResidueDetails
ATHR44
ASER121
ATYR124
BTHR44
BSER121
BTYR124

Catalytic Information from CSA
site_idCSA1
Number of Residues5
Detailsa catalytic site defined by CSA, PubMed 11080166
ChainResidueDetails
AHIS42
ASER121
AMET117
AHIS119
ATYR124

site_idCSA2
Number of Residues5
Detailsa catalytic site defined by CSA, PubMed 11080166
ChainResidueDetails
BHIS42
BSER121
BMET117
BHIS119
BTYR124

site_idMCSA1
Number of Residues6
DetailsM-CSA 794
ChainResidueDetails
AHIS42proton donor
ATHR44electrostatic stabiliser
AMET117electrostatic stabiliser, increase basicity
AHIS119increase nucleophilicity, proton acceptor
ASER121electrostatic stabiliser
ATYR124electrostatic stabiliser

site_idMCSA2
Number of Residues6
DetailsM-CSA 794
ChainResidueDetails
BHIS42proton donor
BTHR44electrostatic stabiliser
BMET117electrostatic stabiliser, increase basicity
BHIS119increase nucleophilicity, proton acceptor
BSER121electrostatic stabiliser
BTYR124electrostatic stabiliser

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PDB entries from 2024-07-10

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