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1IID

Crystal Structure of Saccharomyces cerevisiae N-myristoyltransferase with Bound S-(2-oxo)pentadecylCoA and the Octapeptide GLYASKLA

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006499biological_processN-terminal protein myristoylation
A0016746molecular_functionacyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NI A 1
ChainResidue
AALA34
AASP37
AHIS38

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NI A 2
ChainResidue
AHIS296
AHOH534
AHOH552

site_idAC3
Number of Residues30
DetailsBINDING SITE FOR RESIDUE NHM A 500
ChainResidue
ATRP41
AASN102
ATYR103
AGLU105
AILE168
AASN169
APHE170
ALEU171
ACYS172
AVAL173
AARG178
ASER179
ALYS180
AARG181
ALEU182
ATHR183
APRO184
AILE187
ATHR191
AVAL194
ATYR204
ATHR205
AILE208
ALEU210
APHE425
AHOH510
AHOH549
AHIS38
ALYS39
APHE40

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EINFLCvHK
ChainResidueDetails
AGLU167-LYS175

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGpGDG
ChainResidueDetails
ALYS412-GLY418

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor; via carboxylate => ECO:0000269|PubMed:11478885
ChainResidueDetails
ALEU455

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING:
ChainResidueDetails
AHIS38

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 2nmt
ChainResidueDetails
APHE170
ALEU455
AASN169
ALEU171

site_idMCSA1
Number of Residues5
DetailsM-CSA 928
ChainResidueDetails
AASN169electrostatic stabiliser
APHE170electrostatic stabiliser
ALEU171electrostatic stabiliser
ATHR205electrostatic stabiliser
ALEU455proton shuttle (general acid/base)

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PDB entries from 2024-07-10

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