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1HWY

BOVINE GLUTAMATE DEHYDROGENASE COMPLEXED WITH NAD AND 2-OXOGLUTARATE

Functional Information from GO Data
ChainGOidnamespacecontents
A0004352molecular_functionglutamate dehydrogenase (NAD+) activity
A0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
A0004354molecular_functionglutamate dehydrogenase (NADP+) activity
A0005524molecular_functionATP binding
A0005525molecular_functionGTP binding
A0005739cellular_componentmitochondrion
A0005743cellular_componentmitochondrial inner membrane
A0005783cellular_componentendoplasmic reticulum
A0006520biological_processamino acid metabolic process
A0006538biological_processglutamate catabolic process
A0006541biological_processglutamine metabolic process
A0016491molecular_functionoxidoreductase activity
A0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
A0042802molecular_functionidentical protein binding
A0072350biological_processtricarboxylic acid metabolic process
B0004352molecular_functionglutamate dehydrogenase (NAD+) activity
B0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
B0004354molecular_functionglutamate dehydrogenase (NADP+) activity
B0005524molecular_functionATP binding
B0005525molecular_functionGTP binding
B0005739cellular_componentmitochondrion
B0005743cellular_componentmitochondrial inner membrane
B0005783cellular_componentendoplasmic reticulum
B0006520biological_processamino acid metabolic process
B0006538biological_processglutamate catabolic process
B0006541biological_processglutamine metabolic process
B0016491molecular_functionoxidoreductase activity
B0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
B0042802molecular_functionidentical protein binding
B0072350biological_processtricarboxylic acid metabolic process
C0004352molecular_functionglutamate dehydrogenase (NAD+) activity
C0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
C0004354molecular_functionglutamate dehydrogenase (NADP+) activity
C0005524molecular_functionATP binding
C0005525molecular_functionGTP binding
C0005739cellular_componentmitochondrion
C0005743cellular_componentmitochondrial inner membrane
C0005783cellular_componentendoplasmic reticulum
C0006520biological_processamino acid metabolic process
C0006538biological_processglutamate catabolic process
C0006541biological_processglutamine metabolic process
C0016491molecular_functionoxidoreductase activity
C0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
C0042802molecular_functionidentical protein binding
C0072350biological_processtricarboxylic acid metabolic process
D0004352molecular_functionglutamate dehydrogenase (NAD+) activity
D0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
D0004354molecular_functionglutamate dehydrogenase (NADP+) activity
D0005524molecular_functionATP binding
D0005525molecular_functionGTP binding
D0005739cellular_componentmitochondrion
D0005743cellular_componentmitochondrial inner membrane
D0005783cellular_componentendoplasmic reticulum
D0006520biological_processamino acid metabolic process
D0006538biological_processglutamate catabolic process
D0006541biological_processglutamine metabolic process
D0016491molecular_functionoxidoreductase activity
D0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
D0042802molecular_functionidentical protein binding
D0072350biological_processtricarboxylic acid metabolic process
E0004352molecular_functionglutamate dehydrogenase (NAD+) activity
E0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
E0004354molecular_functionglutamate dehydrogenase (NADP+) activity
E0005524molecular_functionATP binding
E0005525molecular_functionGTP binding
E0005739cellular_componentmitochondrion
E0005743cellular_componentmitochondrial inner membrane
E0005783cellular_componentendoplasmic reticulum
E0006520biological_processamino acid metabolic process
E0006538biological_processglutamate catabolic process
E0006541biological_processglutamine metabolic process
E0016491molecular_functionoxidoreductase activity
E0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
E0042802molecular_functionidentical protein binding
E0072350biological_processtricarboxylic acid metabolic process
F0004352molecular_functionglutamate dehydrogenase (NAD+) activity
F0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
F0004354molecular_functionglutamate dehydrogenase (NADP+) activity
F0005524molecular_functionATP binding
F0005525molecular_functionGTP binding
F0005739cellular_componentmitochondrion
F0005743cellular_componentmitochondrial inner membrane
F0005783cellular_componentendoplasmic reticulum
F0006520biological_processamino acid metabolic process
F0006538biological_processglutamate catabolic process
F0006541biological_processglutamine metabolic process
F0016491molecular_functionoxidoreductase activity
F0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
F0042802molecular_functionidentical protein binding
F0072350biological_processtricarboxylic acid metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 E 502
ChainResidue
ESER213
EARG261
ETYR262
EPO4503
EPO4505
EHOH511
EHOH512

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 D 502
ChainResidue
DTYR262
DPO4503
DPO4505
DHOH509
DHOH510
DSER213
DARG261

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 C 502
ChainResidue
CSER213
CARG261
CTYR262
CPO4503
CPO4504
CHOH509
CHOH510

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 B 502
ChainResidue
BSER213
BARG261
BTYR262
BPO4503
BPO4504
BHOH511
BHOH512

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 F 502
ChainResidue
FARG217
FHIS450
FHOH510
FHOH513

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 F 503
ChainResidue
FSER213
FARG261
FTYR262
FPO4504
FPO4505
FHOH511
FHOH512

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 F 504
ChainResidue
FHIS209
FGLY210
FPO4503
FPO4505

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 E 503
ChainResidue
EHIS209
EGLY210
EPO4502
EPO4505

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 D 503
ChainResidue
DHIS209
DGLY210
DPO4502
DPO4505

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 C 503
ChainResidue
CHIS209
CGLY210
CPO4502
CPO4504

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B 503
ChainResidue
BHIS209
BGLY210
BPO4502
BPO4504

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 E 504
ChainResidue
EARG217
EHIS450
EHOH510
EHOH513

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B 504
ChainResidue
BPO4502
BPO4503
BHOH510
BHOH512

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 A 502
ChainResidue
AHIS209
AGLY210
APO4503
APO4505

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A 503
ChainResidue
ASER213
AARG261
ATYR262
APO4502
APO4505
AHOH509
AHOH510

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 A 504
ChainResidue
AARG217
AHIS450
AHOH511
AHOH514

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 A 505
ChainResidue
APO4502
APO4503
AHOH510
AHOH514

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 C 504
ChainResidue
CPO4502
CPO4503
CHOH510
CHOH514

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 D 504
ChainResidue
DARG217
DHIS450
DHOH511
DHOH514

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 C 505
ChainResidue
CARG217
CHIS450
CHOH511
CHOH514

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B 505
ChainResidue
BHIS450
BHOH510
BHOH513
BARG217

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 F 505
ChainResidue
FPO4503
FPO4504
FHOH510
FHOH512

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 E 505
ChainResidue
EPO4502
EPO4503
EHOH510
EHOH512

site_idCC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 D 505
ChainResidue
DPO4502
DPO4503
DHOH510
DHOH514

site_idCC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE AKG F 506
ChainResidue
FLYS90
FGLY92
FMET111
FLYS114
FLYS126
FALA166
FPRO167
FASN168
FTHR199
FARG211
FASN349
FASN374
FVAL378
FSER381
FNAD507

site_idCC8
Number of Residues15
DetailsBINDING SITE FOR RESIDUE AKG D 506
ChainResidue
DLYS90
DGLY92
DMET111
DLYS114
DLYS126
DALA166
DPRO167
DASN168
DTHR199
DARG211
DASN349
DASN374
DVAL378
DSER381
DNAD508

site_idCC9
Number of Residues15
DetailsBINDING SITE FOR RESIDUE AKG C 506
ChainResidue
CLYS90
CGLY92
CMET111
CLYS114
CLYS126
CALA166
CPRO167
CASN168
CTHR199
CARG211
CASN349
CASN374
CVAL378
CSER381
CNAD508

site_idDC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE AKG E 506
ChainResidue
ELYS90
EGLY92
EMET111
ELYS114
ELYS126
EALA166
EPRO167
EASN168
ETHR199
EARG211
EASN349
EASN374
EVAL378
ESER381
ENAD508

site_idDC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE AKG B 506
ChainResidue
BLYS90
BGLY92
BMET111
BLYS114
BLYS126
BALA166
BPRO167
BASN168
BTHR199
BARG211
BASN349
BASN374
BVAL378
BSER381
BNAD508

site_idDC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE AKG A 506
ChainResidue
ALYS90
AGLY92
AMET111
ALYS114
ALYS126
AALA166
APRO167
AASN168
ATHR199
AARG211
AASN349
AASN374
AVAL378
ASER381
ANAD508

site_idDC4
Number of Residues22
DetailsBINDING SITE FOR RESIDUE NAD D 507
ChainResidue
CGLN85
CARG86
CTHR87
CCYS115
CALA116
CASP119
CVAL120
CPRO121
CARG459
CLYS488
CVAL489
DHIS195
DGLN205
DGLY206
DLYS387
DASN388
DASN390
DHIS391
DVAL392
DSER393
DARG396
DGLU445

site_idDC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE NAD A 507
ChainResidue
AHIS195
AGLN205
AGLY206
ALYS387
AASN388
AASN390
AHIS391
AVAL392
ASER393
AARG396
BGLN85
BARG86
BTHR87
BCYS115
BALA116
BASP119
BVAL120
BPRO121
BARG459
BLYS488
BVAL489

site_idDC6
Number of Residues23
DetailsBINDING SITE FOR RESIDUE NAD F 507
ChainResidue
FARG94
FASN168
FMET169
FSER170
FARG211
FTHR215
FGLY251
FPHE252
FGLY253
FASN254
FVAL255
FGLU275
FSER276
FLYS295
FALA325
FALA326
FSER327
FGLN330
FGLY347
FALA348
FASN349
FASN374
FAKG506

site_idDC7
Number of Residues21
DetailsBINDING SITE FOR RESIDUE NAD E 507
ChainResidue
DGLN85
DARG86
DTHR87
DCYS115
DALA116
DASP119
DVAL120
DPRO121
DARG459
DLYS488
DVAL489
EHIS195
EGLY206
ELYS387
EASN388
EASN390
EHIS391
EVAL392
ESER393
EARG396
EGLU445

site_idDC8
Number of Residues22
DetailsBINDING SITE FOR RESIDUE NAD B 507
ChainResidue
BHIS195
BGLN205
BGLY206
BLYS387
BASN388
BASN390
BHIS391
BVAL392
BSER393
BARG396
BGLU445
FGLN85
FARG86
FTHR87
FCYS115
FALA116
FASP119
FVAL120
FPRO121
FARG459
FLYS488
FVAL489

site_idDC9
Number of Residues22
DetailsBINDING SITE FOR RESIDUE NAD C 507
ChainResidue
CHIS195
CGLN205
CGLY206
CLYS387
CASN388
CASN390
CHIS391
CVAL392
CSER393
CARG396
CGLU445
EGLN85
EARG86
ETHR87
ECYS115
EALA116
EASP119
EVAL120
EPRO121
EARG459
ELYS488
EVAL489

site_idEC1
Number of Residues23
DetailsBINDING SITE FOR RESIDUE NAD C 508
ChainResidue
CARG94
CASN168
CMET169
CSER170
CARG211
CTHR215
CGLY251
CPHE252
CGLY253
CASN254
CVAL255
CGLU275
CSER276
CLYS295
CALA325
CALA326
CSER327
CGLN330
CGLY347
CALA348
CASN349
CASN374
CAKG506

site_idEC2
Number of Residues23
DetailsBINDING SITE FOR RESIDUE NAD A 508
ChainResidue
AARG94
AASN168
AMET169
ASER170
AARG211
ATHR215
AGLY251
APHE252
AGLY253
AASN254
AVAL255
AGLU275
ASER276
ALYS295
AALA325
AALA326
ASER327
AGLN330
AGLY347
AALA348
AASN349
AASN374
AAKG506

site_idEC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE NAD F 508
ChainResidue
AGLN85
AARG86
ATHR87
ACYS115
AALA116
AASP119
AVAL120
APRO121
AARG459
ALYS488
AVAL489
FHIS195
FGLN205
FGLY206
FLYS387
FASN388
FASN390
FHIS391
FVAL392
FSER393
FARG396
FGLU445

site_idEC4
Number of Residues23
DetailsBINDING SITE FOR RESIDUE NAD B 508
ChainResidue
BARG94
BASN168
BMET169
BSER170
BARG211
BTHR215
BGLY251
BPHE252
BGLY253
BASN254
BVAL255
BGLU275
BSER276
BLYS295
BALA325
BALA326
BSER327
BGLN330
BGLY347
BALA348
BASN349
BASN374
BAKG506

site_idEC5
Number of Residues23
DetailsBINDING SITE FOR RESIDUE NAD D 508
ChainResidue
DARG94
DASN168
DMET169
DSER170
DARG211
DTHR215
DGLY251
DPHE252
DGLY253
DASN254
DVAL255
DGLU275
DSER276
DLYS295
DALA325
DALA326
DSER327
DGLN330
DGLY347
DALA348
DASN349
DASN374
DAKG506

site_idEC6
Number of Residues23
DetailsBINDING SITE FOR RESIDUE NAD E 508
ChainResidue
EARG94
EASN168
EMET169
ESER170
EARG211
ETHR215
EGLY251
EPHE252
EGLY253
EASN254
EVAL255
EGLU275
ESER276
ELYS295
EALA325
EALA326
ESER327
EGLN330
EGLY347
EALA348
EASN349
EASN374
EAKG506

Functional Information from PROSITE/UniProt
site_idPS00074
Number of Residues14
DetailsGLFV_DEHYDROGENASE Glu / Leu / Phe / Val dehydrogenases active site. VpfGGAKaGvkiNP
ChainResidueDetails
AVAL120-PRO133

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: ACT_SITE => ECO:0000255|PROSITE-ProRule:PRU10011
ChainResidueDetails
ATYR183
BTYR183
CTYR183
DTYR183
ETYR183
FTYR183

site_idSWS_FT_FI2
Number of Residues66
DetailsBINDING: BINDING => ECO:0000269|PubMed:11254391
ChainResidueDetails
ALEU141
AASP438
ASER444
BLEU141
BARG147
BTHR171
BMET176
BPHE252
BPHE266
BCYS270
BCYS319
AARG147
BLEU322
BASP438
BSER444
CLEU141
CARG147
CTHR171
CMET176
CPHE252
CPHE266
CCYS270
ATHR171
CCYS319
CLEU322
CASP438
CSER444
DLEU141
DARG147
DTHR171
DMET176
DPHE252
DPHE266
AMET176
DCYS270
DCYS319
DLEU322
DASP438
DSER444
ELEU141
EARG147
ETHR171
EMET176
EPHE252
APHE252
EPHE266
ECYS270
ECYS319
ELEU322
EASP438
ESER444
FLEU141
FARG147
FTHR171
FMET176
APHE266
FPHE252
FPHE266
FCYS270
FCYS319
FLEU322
FASP438
FSER444
ACYS270
ACYS319
ALEU322

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:12653548
ChainResidueDetails
AHIS450
BHIS450
CHIS450
DHIS450
EHIS450
FHIS450

site_idSWS_FT_FI4
Number of Residues12
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
AASP68
EGLY200
FASP68
FGLY200
AGLY200
BASP68
BGLY200
CASP68
CGLY200
DASP68
DGLY200
EASP68

site_idSWS_FT_FI5
Number of Residues12
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
AARG79
EGLY128
FARG79
FGLY128
AGLY128
BARG79
BGLY128
CARG79
CGLY128
DARG79
DGLY128
EARG79

site_idSWS_FT_FI6
Number of Residues36
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000269|PubMed:22076378
ChainResidueDetails
AHIS84
BARG363
BGLU415
BMET457
CHIS84
CLEU110
CVAL162
CARG363
CGLU415
CMET457
DHIS84
ALEU110
DLEU110
DVAL162
DARG363
DGLU415
DMET457
EHIS84
ELEU110
EVAL162
EARG363
EGLU415
AVAL162
EMET457
FHIS84
FLEU110
FVAL162
FARG363
FGLU415
FMET457
AARG363
AGLU415
AMET457
BHIS84
BLEU110
BVAL162

site_idSWS_FT_FI7
Number of Residues18
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:22076378
ChainResidueDetails
ALYS90
DLYS90
DLEU386
DPHE399
ELYS90
ELEU386
EPHE399
FLYS90
FLEU386
FPHE399
ALEU386
APHE399
BLYS90
BLEU386
BPHE399
CLYS90
CLEU386
CPHE399

site_idSWS_FT_FI8
Number of Residues6
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
AASN135
BASN135
CASN135
DASN135
EASN135
FASN135

site_idSWS_FT_FI9
Number of Residues6
DetailsMOD_RES: N6-(2-hydroxyisobutyryl)lysine => ECO:0000250|UniProtKB:P00367
ChainResidueDetails
AARG147
BARG147
CARG147
DARG147
EARG147
FARG147

site_idSWS_FT_FI10
Number of Residues24
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
ATHR171
CILE187
CARG211
CALA326
DTHR171
DILE187
DARG211
DALA326
ETHR171
EILE187
EARG211
AILE187
EALA326
FTHR171
FILE187
FARG211
FALA326
AARG211
AALA326
BTHR171
BILE187
BARG211
BALA326
CTHR171

site_idSWS_FT_FI11
Number of Residues6
DetailsMOD_RES: ADP-ribosylcysteine => ECO:0000250|UniProtKB:P00367
ChainResidueDetails
AGLY172
BGLY172
CGLY172
DGLY172
EGLY172
FGLY172

site_idSWS_FT_FI12
Number of Residues48
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
ATYR183
BASP191
BGLU346
BTHR352
BILE365
BASN390
BLEU477
BALA480
CTYR183
CASP191
CGLU346
AASP191
CTHR352
CILE365
CASN390
CLEU477
CALA480
DTYR183
DASP191
DGLU346
DTHR352
DILE365
AGLU346
DASN390
DLEU477
DALA480
ETYR183
EASP191
EGLU346
ETHR352
EILE365
EASN390
ELEU477
ATHR352
EALA480
FTYR183
FASP191
FGLU346
FTHR352
FILE365
FASN390
FLEU477
FALA480
AILE365
AASN390
ALEU477
AALA480
BTYR183

site_idSWS_FT_FI13
Number of Residues12
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P00367
ChainResidueDetails
AILE227
EGLN384
FILE227
FGLN384
AGLN384
BILE227
BGLN384
CILE227
CGLN384
DILE227
DGLN384
EILE227

site_idSWS_FT_FI14
Number of Residues6
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P10860
ChainResidueDetails
ALEU410
BLEU410
CLEU410
DLEU410
ELEU410
FLEU410

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1hrd
ChainResidueDetails
ALYS126
AASN168

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1hrd
ChainResidueDetails
BLYS126
BASN168

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1hrd
ChainResidueDetails
CLYS126
CASN168

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1hrd
ChainResidueDetails
DLYS126
DASN168

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1hrd
ChainResidueDetails
ELYS126
EASN168

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1hrd
ChainResidueDetails
FLYS126
FASN168

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PDB entries from 2024-07-17

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