1H1W

High resolution crystal structure of the human PDK1 catalytic domain

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004672	molecular_function	protein kinase activity
A	0004674	molecular_function	protein serine/threonine kinase activity
A	0005524	molecular_function	ATP binding
A	0006468	biological_process	protein phosphorylation

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 A 1368

Chain	Residue
A	LYS76
A	ARG131
A	THR148
A	PHE149
A	GLN150
A	HOH2043

---

site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 A 1369

Chain	Residue
A	GOL1363
A	HOH2194
A	HOH2195
A	TYR146
A	SER160
A	GLN220

---

site_id	AC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 A 1370

Chain	Residue
A	ARG106
A	PRO140
A	GOL1363
A	GOL1365
A	HOH2195

---

site_id	AC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 A 1371

Chain	Residue
A	LYS83
A	THR346
A	TRP347
A	GLU348

---

site_id	AC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 A 1372

Chain	Residue
A	ARG75
A	ARG136
A	LYS199

---

site_id	AC6
Number of Residues	18
Details	BINDING SITE FOR RESIDUE ATP A 1373

Chain	Residue
A	GLY89
A	GLY91
A	SER92
A	SER94
A	VAL96
A	ALA109
A	LYS111
A	SER160
A	ALA162
A	GLU166
A	LEU212
A	GOL1366
A	HOH2104
A	HOH2196
A	HOH2197
A	HOH2198
A	HOH2199
A	HOH2200

---

site_id	AC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE GOL A 1360

Chain	Residue
A	PHE84
A	LYS154
A	TYR156
A	GLU328
A	GLU331
A	GLY332
A	HOH2187

---

site_id	AC8
Number of Residues	10
Details	BINDING SITE FOR RESIDUE GOL A 1361

Chain	Residue
A	ALA103
A	THR104
A	SER105
A	HIS139
A	SER191
A	TRP347
A	GLU348
A	ASN349
A	LEU350
A	HIS351

---

site_id	AC9
Number of Residues	8
Details	BINDING SITE FOR RESIDUE GOL A 1362

Chain	Residue
A	PHE82
A	LYS83
A	PHE84
A	GLU194
A	GLY334
A	LYS337
A	HOH2187
A	HOH2189

---

site_id	BC1
Number of Residues	9
Details	BINDING SITE FOR RESIDUE GOL A 1363

Chain	Residue
A	ARG106
A	GLU107
A	TYR108
A	SER160
A	TYR161
A	GOL1365
A	SO41369
A	SO41370
A	HOH2069

---

site_id	BC2
Number of Residues	7
Details	BINDING SITE FOR RESIDUE GOL A 1364

Chain	Residue
A	LYS315
A	MET330
A	HOH2010
A	HOH2153
A	HOH2191
A	HOH2192
A	HOH2193

---

site_id	BC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE GOL A 1365

Chain	Residue
A	SER105
A	ARG106
A	GLU107
A	HIS351
A	GLN352
A	GOL1363
A	SO41370

---

site_id	BC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL A 1366

Chain	Residue
A	SER94
A	LYS111
A	GLU130
A	ATP1373
A	HOH2111
A	HOH2200

---

site_id	BC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL A 1367

Chain	Residue
A	HOH2143
A	LEU297
A	TYR299
A	PHE301

---

Functional Information from PROSITE/UniProt

site_id	PS00107
Number of Residues	24
Details	PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGEGSFSTVVlArelatsre..........YAIK

Chain	Residue	Details
A	LEU88-LYS111

---

site_id	PS00108
Number of Residues	13
Details	PROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. IiHrDLKpeNILL

Chain	Residue	Details
A	ILE201-LEU213

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	ACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000255|PROSITE-ProRule:PRU10027

Chain	Residue	Details
A	ASP205

---

site_id	SWS_FT_FI2
Number of Residues	5
Details	BINDING: BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883

Chain	Residue	Details
A	SER92
A	LYS111
A	SER160
A	GLU166
A	ASP223

---

site_id	SWS_FT_FI3
Number of Residues	1
Details	BINDING: BINDING => ECO:0000269|PubMed:22999883

Chain	Residue	Details
A	GLU209

---

site_id	SWS_FT_FI4
Number of Residues	1
Details	MOD_RES: Phosphoserine; by autocatalysis => ECO:0000269|PubMed:10455013, ECO:0000269|PubMed:11481331, ECO:0000269|PubMed:15772071, ECO:0000269|PubMed:16780920, ECO:0000269|Ref.8

Chain	Residue	Details
A	SEP241

---

site_id	SWS_FT_FI5
Number of Residues	1
Details	MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q9Z2A0

Chain	Residue	Details
A	LYS304

---

site_id	SWS_FT_FI6
Number of Residues	1
Details	MOD_RES: Phosphothreonine; by MELK => ECO:0000269|PubMed:22544756

Chain	Residue	Details
A	THR354

---