1H1W
High resolution crystal structure of the human PDK1 catalytic domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-1 |
Synchrotron site | ESRF |
Beamline | ID14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2002-03-04 |
Detector | ADSC CCD |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 123.013, 123.013, 47.624 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 25.000 * - 2.000 |
R-factor | 0.196 |
Rwork | 0.196 |
R-free | 0.22200 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ydb |
RMSD bond length | 0.005 |
RMSD bond angle | 21.600 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.091 | 0.454 |
Total number of observations | 77315 * | |
Number of reflections | 27643 | |
<I/σ(I)> | 7.3 | 2 |
Completeness [%] | 98.0 | 93.5 |
Redundancy | 2.8 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, sitting drop * | 8.5 | 20 * | 0.1 M TRIS/HCL PH 8.5, 2.0 M AMMONIUM SULPHATE, 16.6 MM ATP |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | EDTA | 100 (mM) | |
2 | 1 | drop | Tris-HCl | 0.1 (M) | pH8.5 |
3 | 1 | drop | ammonium sulfate | 2.0 (M) | |
4 | 1 | drop | ATP | 16.6 (mM) | |
5 | 1 | reservoir | Tris-HCl | 0.1 (M) | pH8.5 |
6 | 1 | reservoir | ammonium sulfate | 2.0 (M) | |
7 | 1 | reservoir | ATP | 16.6 (mM) |