1H1W
High resolution crystal structure of the human PDK1 catalytic domain
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE ID14-1 |
| Synchrotron site | ESRF |
| Beamline | ID14-1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2002-03-04 |
| Detector | ADSC CCD |
| Spacegroup name | P 32 2 1 |
| Unit cell lengths | 123.013, 123.013, 47.624 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 25.000 * - 2.000 |
| R-factor | 0.196 |
| Rwork | 0.196 |
| R-free | 0.22200 * |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1ydb |
| RMSD bond length | 0.005 |
| RMSD bond angle | 21.600 * |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | AMoRE |
| Refinement software | CNS (1.0) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 25.000 | 2.070 |
| High resolution limit [Å] | 2.000 | 2.000 |
| Rmerge | 0.091 | 0.454 |
| Total number of observations | 77315 * | |
| Number of reflections | 27643 | |
| <I/σ(I)> | 7.3 | 2 |
| Completeness [%] | 98.0 | 93.5 |
| Redundancy | 2.8 | 2.5 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | Vapor diffusion, sitting drop * | 8.5 | 20 * | 0.1 M TRIS/HCL PH 8.5, 2.0 M AMMONIUM SULPHATE, 16.6 MM ATP |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | EDTA | 100 (mM) | |
| 2 | 1 | drop | Tris-HCl | 0.1 (M) | pH8.5 |
| 3 | 1 | drop | ammonium sulfate | 2.0 (M) | |
| 4 | 1 | drop | ATP | 16.6 (mM) | |
| 5 | 1 | reservoir | Tris-HCl | 0.1 (M) | pH8.5 |
| 6 | 1 | reservoir | ammonium sulfate | 2.0 (M) | |
| 7 | 1 | reservoir | ATP | 16.6 (mM) |






