1EZV
STRUCTURE OF THE YEAST CYTOCHROME BC1 COMPLEX CO-CRYSTALLIZED WITH AN ANTIBODY FV-FRAGMENT
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004222 | molecular_function | metalloendopeptidase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005739 | cellular_component | mitochondrion |
A | 0005743 | cellular_component | mitochondrial inner membrane |
A | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
A | 0006627 | biological_process | protein processing involved in protein targeting to mitochondrion |
A | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
A | 0009060 | biological_process | aerobic respiration |
A | 0045275 | cellular_component | respiratory chain complex III |
A | 0045333 | biological_process | cellular respiration |
A | 0046872 | molecular_function | metal ion binding |
A | 1902600 | biological_process | proton transmembrane transport |
B | 0004222 | molecular_function | metalloendopeptidase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005739 | cellular_component | mitochondrion |
B | 0005743 | cellular_component | mitochondrial inner membrane |
B | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
B | 0006508 | biological_process | proteolysis |
B | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
B | 0009060 | biological_process | aerobic respiration |
B | 0030061 | cellular_component | mitochondrial crista |
B | 0045275 | cellular_component | respiratory chain complex III |
B | 0045333 | biological_process | cellular respiration |
B | 0046872 | molecular_function | metal ion binding |
B | 1902600 | biological_process | proton transmembrane transport |
C | 0005739 | cellular_component | mitochondrion |
C | 0005743 | cellular_component | mitochondrial inner membrane |
C | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
C | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
C | 0009055 | molecular_function | electron transfer activity |
C | 0009060 | biological_process | aerobic respiration |
C | 0016020 | cellular_component | membrane |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0022904 | biological_process | respiratory electron transport chain |
C | 0045275 | cellular_component | respiratory chain complex III |
C | 0045333 | biological_process | cellular respiration |
C | 0046872 | molecular_function | metal ion binding |
C | 1902600 | biological_process | proton transmembrane transport |
D | 0009055 | molecular_function | electron transfer activity |
D | 0020037 | molecular_function | heme binding |
E | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
E | 0016020 | cellular_component | membrane |
E | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
F | 0005739 | cellular_component | mitochondrion |
F | 0005743 | cellular_component | mitochondrial inner membrane |
F | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
F | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
F | 0009060 | biological_process | aerobic respiration |
F | 0034551 | biological_process | mitochondrial respiratory chain complex III assembly |
F | 0045275 | cellular_component | respiratory chain complex III |
F | 0045333 | biological_process | cellular respiration |
F | 0099617 | cellular_component | matrix side of mitochondrial inner membrane |
F | 1902600 | biological_process | proton transmembrane transport |
G | 0005739 | cellular_component | mitochondrion |
G | 0005743 | cellular_component | mitochondrial inner membrane |
G | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
G | 0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity |
G | 0009060 | biological_process | aerobic respiration |
G | 0045275 | cellular_component | respiratory chain complex III |
G | 0045333 | biological_process | cellular respiration |
G | 1902600 | biological_process | proton transmembrane transport |
I | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
I | 0045275 | cellular_component | respiratory chain complex III |
X | 0002250 | biological_process | adaptive immune response |
X | 0005576 | cellular_component | extracellular region |
X | 0005886 | cellular_component | plasma membrane |
X | 0019814 | cellular_component | immunoglobulin complex |
Y | 0002250 | biological_process | adaptive immune response |
Y | 0005615 | cellular_component | extracellular space |
Y | 0006955 | biological_process | immune response |
Y | 0019814 | cellular_component | immunoglobulin complex |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE HEM C 401 |
Chain | Residue |
C | LEU40 |
C | PHE89 |
C | THR127 |
C | ALA128 |
C | GLY131 |
C | VAL135 |
C | HIS183 |
C | TYR184 |
C | PRO187 |
C | HOH527 |
C | HOH539 |
C | GLN43 |
C | GLY47 |
C | ILE48 |
C | MET50 |
C | ALA51 |
C | ARG79 |
C | HIS82 |
C | ALA83 |
site_id | AC2 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE HEM C 402 |
Chain | Residue |
C | TRP30 |
C | GLY33 |
C | LEU36 |
C | HIS96 |
C | LYS99 |
C | SER105 |
C | LEU113 |
C | GLY117 |
C | VAL118 |
C | ILE120 |
C | HIS197 |
C | LEU201 |
C | SER206 |
C | SER207 |
C | UQ6506 |
C | HOH508 |
C | HOH528 |
site_id | AC3 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE HEM D 3 |
Chain | Residue |
D | VAL100 |
D | CYS101 |
D | CYS104 |
D | HIS105 |
D | ASN169 |
D | PRO175 |
D | ARG184 |
D | TYR190 |
D | ILE191 |
D | PHE218 |
D | ILE223 |
D | ALA224 |
D | MET225 |
D | VAL228 |
D | HOH317 |
D | HOH372 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE FES E 4 |
Chain | Residue |
E | CYS159 |
E | HIS161 |
E | LEU162 |
E | CYS178 |
E | HIS181 |
E | SER183 |
site_id | AC5 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE SMA C 505 |
Chain | Residue |
C | ILE125 |
C | PHE129 |
C | VAL146 |
C | ILE269 |
C | PRO271 |
C | GLU272 |
C | LEU275 |
C | TYR279 |
C | MET295 |
C | PHE296 |
C | HOH548 |
E | HIS181 |
site_id | AC6 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE UQ6 C 506 |
Chain | Residue |
C | TYR16 |
C | GLN22 |
C | LEU40 |
C | ILE44 |
C | PHE49 |
C | MET52 |
C | LEU198 |
C | LEU201 |
C | SER206 |
C | MET221 |
C | HEM402 |
Functional Information from PROSITE/UniProt
site_id | PS00143 |
Number of Residues | 23 |
Details | INSULINASE Insulinase family, zinc-binding region signature. Ggsryatkd.GvAHLLNRFnFqNT |
Chain | Residue | Details |
B | GLY37-THR59 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 47 |
Details | TOPO_DOM: Mitochondrial matrix => ECO:0000269|PubMed:18390544, ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
G | GLY2-PHE49 | |
C | TYR103-ARG110 | |
C | GLY205-SER223 | |
C | ASP309-LYS319 | |
C | ILE365-LYS385 |
site_id | SWS_FT_FI2 |
Number of Residues | 30 |
Details | TRANSMEM: Helical => ECO:0000269|PubMed:18390544, ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
G | ARG50-LEU80 | |
C | GLY75-TYR102 | |
C | VAL111-VAL135 | |
C | ASN173-HIS204 | |
C | TYR224-TYR246 | |
C | LYS288-THR308 | |
C | VAL320-GLY340 | |
C | TYR348-LEU364 |
site_id | SWS_FT_FI3 |
Number of Residues | 13 |
Details | TOPO_DOM: Mitochondrial intermembrane => ECO:0000269|PubMed:18390544, ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
G | TYR81-VAL94 | |
D | CYS104 | |
C | SER247-ASP287 | |
C | ALA341-PRO347 |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000269|PubMed:10873857, ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0000269|PubMed:30598554, ECO:0007744|PDB:1EZV, ECO:0007744|PDB:1KB9, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:1P84, ECO:0007744|PDB:2IBZ, ECO:0007744|PDB:3CX5, ECO:0007744|PDB:3CXH, ECO:0007744|PDB:4PD4 |
Chain | Residue | Details |
E | CYS159 | |
E | HIS161 | |
E | CYS178 | |
E | HIS181 |
site_id | SWS_FT_FI5 |
Number of Residues | 1 |
Details | BINDING: axial binding residue => ECO:0000269|PubMed:10873857, ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0000269|PubMed:30598554, ECO:0007744|PDB:1EZV, ECO:0007744|PDB:1KYO |
Chain | Residue | Details |
D | MET225 | |
C | HIS96 | |
C | HIS183 | |
C | HIS197 |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:P00157 |
Chain | Residue | Details |
C | HIS202 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1ndo |
Chain | Residue | Details |
E | HIS181 |
site_id | CSA2 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1ndo |
Chain | Residue | Details |
A | LYS73 |
site_id | CSA3 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1ndo |
Chain | Residue | Details |
B | ASN52 |
site_id | MCSA1 |
Number of Residues | 1 |
Details | M-CSA 208 |
Chain | Residue | Details |
E | HIS181 | covalently attached, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, radical stabiliser |
C | SER206 | electrostatic stabiliser, hydrogen bond donor, radical stabiliser |
C | LYS228 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, radical stabiliser |
C | ASP229 | electrostatic stabiliser, hydrogen bond acceptor, radical stabiliser |
C | GLU272 | hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, radical stabiliser |