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1E3U

MAD structure of OXA10 class D beta-lactamase

Functional Information from GO Data
ChainGOidnamespacecontents
A0005886cellular_componentplasma membrane
A0008658molecular_functionpenicillin binding
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0042597cellular_componentperiplasmic space
A0046677biological_processresponse to antibiotic
A0071555biological_processcell wall organization
B0005886cellular_componentplasma membrane
B0008658molecular_functionpenicillin binding
B0008800molecular_functionbeta-lactamase activity
B0016787molecular_functionhydrolase activity
B0017001biological_processantibiotic catabolic process
B0042597cellular_componentperiplasmic space
B0046677biological_processresponse to antibiotic
B0071555biological_processcell wall organization
C0005886cellular_componentplasma membrane
C0008658molecular_functionpenicillin binding
C0008800molecular_functionbeta-lactamase activity
C0016787molecular_functionhydrolase activity
C0017001biological_processantibiotic catabolic process
C0042597cellular_componentperiplasmic space
C0046677biological_processresponse to antibiotic
C0071555biological_processcell wall organization
D0005886cellular_componentplasma membrane
D0008658molecular_functionpenicillin binding
D0008800molecular_functionbeta-lactamase activity
D0016787molecular_functionhydrolase activity
D0017001biological_processantibiotic catabolic process
D0042597cellular_componentperiplasmic space
D0046677biological_processresponse to antibiotic
D0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE AUC E 1
ChainResidue
AALA66
ASER67
APHE69
ALYS70
AASN73
APHE120
ATRP154
AHOH401
AHOH558

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE AUC E 2
ChainResidue
BALA66
BSER67
BPHE69
BLYS70
BASN73
BPHE120
BTRP154
BHOH569

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE AUC E 3
ChainResidue
CLYS70
CALA116
CVAL117
CTRP154
CHOH434
CAUC302

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE AUC E 4
ChainResidue
BLYS95
BHOH515
CALA66
CSER67
CLYS70
CASN73
CPHE120
CTRP154
CAUC301

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE AUC E 5
ChainResidue
CGLN133
CHOH410
CEDO308

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE AUC E 6
ChainResidue
DALA66
DSER67
DLYS70
DASN73
DPHE120
DTRP154
DAUC302
DHOH542

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE AUC E 7
ChainResidue
DLYS70
DALA116
DVAL117
DTRP154
DHOH454
DAUC301

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE AUC E 8
ChainResidue
DGLN133
DHOH452
DHOH539

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 E 9
ChainResidue
ASER115
ATHR206
AGLY207
APHE208
AARG250
AHOH500
AHOH469
AHOH411
AHOH498

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 E 10
ChainResidue
AARG131
ALYS134
ATYR135

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 E 11
ChainResidue
AARG160
AHOH542

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 E 12
ChainResidue
AILE22
CSER33
CALA36
CVAL37
CASN38
CEDO307

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 E 13
ChainResidue
BSER115
BLYS205
BTHR206
BGLY207
BPHE208
BARG250
BHOH464
BHOH577
BHOH450

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 E 14
ChainResidue
BMET99
BLYS100
BGLN101

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 E 15
ChainResidue
BGLU35
BSER245
BLYS246
BHOH432
BHOH401
BHOH433

site_idBC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 E 16
ChainResidue
BPRO198
BGLU199
BLEU201
BGLU227
BGLU229
DTHR107
DARG109
BHOH560

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 E 17
ChainResidue
CSER67
CTHR206
CGLY207
CPHE208
CARG250
CHOH505
BLYS95

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 E 18
ChainResidue
AHOH425
AHOH436
CSER181
CLYS182
CHOH517
CHOH514

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 E 19
ChainResidue
ALYS95
DSER67
DTHR206
DGLY207
DPHE208
DARG250

site_idCC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 E 20
ChainResidue
BGLU183
BHOH516
BHOH466
DSER181
DLYS182
DHOH464
DHOH561
DHOH506

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 E 21
ChainResidue
DTHR213
DSER215
DASN216
DHOH523
DHOH501

site_idCC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 E 22
ChainResidue
AGLY128
AGLU129
AVAL130
AHOH518
AHOH402
AHOH526

site_idCC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 E 23
ChainResidue
ATHR107
AARG109
CPRO198
CGLU199
CLEU201
CGLU227
CGLU229
CHOH452
AHOH553
AHOH508

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO E 24
ChainResidue
CGLU195
CTYR200
CHOH612

site_idCC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO E 25
ChainResidue
CASN29
CPHE32
CVAL37
CASN38
CGLY39
CASN54
CHOH408
ASO4305
CHOH441

site_idCC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO E 26
ChainResidue
BASN29
BVAL37
BASN38
BGLY39
BASN54
BHOH565

site_idCC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO E 27
ChainResidue
BGLU261

site_idDC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO E 28
ChainResidue
BTHR107
BARG109
DPRO198
DGLU199
DGLU229
DHOH433

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO E 29
ChainResidue
BTHR80
BARG131
BLYS134
BTYR135
BHOH493

site_idDC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO E 30
ChainResidue
AGLU199
AGLU227
AGLU229
CTHR107
CHOH438
AHOH447
AHOH520

site_idDC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO E 31
ChainResidue
CILE146
CSER147
CGLY148
CGLY149
CILE150
CAUC303

site_idDC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO E 32
ChainResidue
AALA36
APRO217
AASP240
AASP242
AHOH409
AHOH413
AHOH434

site_idDC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO E 33
ChainResidue
BGLU195
BTYR200
BVAL202
BMET258
BGLU259
BILE263
BHOH416

site_idDC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO E 34
ChainResidue
BPRO217
BASP240
BHOH453
BHOH403
BHOH402

site_idDC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO E 35
ChainResidue
BASN143
BASN145

Functional Information from PROSITE/UniProt
site_idPS00337
Number of Residues11
DetailsBETA_LACTAMASE_D Beta-lactamase class-D active site. PaSTFKIPnAI
ChainResidueDetails
APRO65-ILE75
DPRO65-ILE75

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Acyl-ester intermediate => ECO:0000269|PubMed:11724923, ECO:0000269|PubMed:19860471, ECO:0007744|PDB:1K54, ECO:0007744|PDB:2WGI
ChainResidueDetails
DSER67
BSER67
CSER67

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:19860471, ECO:0007744|PDB:2WGI
ChainResidueDetails
DSER115
CTHR206
CPHE208
CARG250
DTHR206
DPHE208
DARG250
BSER115
BTHR206
BPHE208
BARG250
CSER115

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: N6-carboxylysine => ECO:0000269|PubMed:11188693, ECO:0000269|PubMed:11724923, ECO:0000269|PubMed:19860471, ECO:0007744|PDB:1E4D, ECO:0007744|PDB:1K4E, ECO:0007744|PDB:1K4F, ECO:0007744|PDB:1K54, ECO:0007744|PDB:1K55, ECO:0007744|PDB:1K56, ECO:0007744|PDB:1K57, ECO:0007744|PDB:1K6S, ECO:0007744|PDB:2RL3
ChainResidueDetails
DLYS70
BLYS70
CLYS70

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1m6k
ChainResidueDetails
DSER67

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1m6k
ChainResidueDetails
ASER67

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1m6k
ChainResidueDetails
BSER67

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1m6k
ChainResidueDetails
CSER67

237735

PDB entries from 2025-06-18

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