1E08
Structural model of the [Fe]-Hydrogenase/cytochrome c553 complex combining NMR and soft-docking
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| D | 0008901 | molecular_function | ferredoxin hydrogenase activity |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0042597 | cellular_component | periplasmic space |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0051536 | molecular_function | iron-sulfur cluster binding |
| E | 0042597 | cellular_component | periplasmic space |
| E | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE FE2 A 5 |
| Chain | Residue |
| A | PDT4 |
| A | FE26 |
| A | CYN7 |
| A | CYN8 |
| A | CMO9 |
| A | CMO10 |
| A | HOH11 |
| A | ALA293 |
| site_id | AC2 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE FE2 A 6 |
| Chain | Residue |
| A | FE25 |
| A | CYN7 |
| A | CYN8 |
| A | CMO9 |
| A | CMO10 |
| A | HOH11 |
| A | PRO108 |
| A | THR145 |
| A | ALA149 |
| A | PDT4 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN D 12 |
| Chain | Residue |
| D | HIS82 |
| D | LYS83 |
| D | HIS85 |
| D | ASP86 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE CYN A 7 |
| Chain | Residue |
| A | PDT4 |
| A | FE25 |
| A | FE26 |
| A | CYN8 |
| A | CMO9 |
| A | CMO10 |
| A | HOH11 |
| A | ALA149 |
| A | PRO203 |
| A | PHE296 |
| site_id | AC5 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE CYN A 8 |
| Chain | Residue |
| A | PDT4 |
| A | FE25 |
| A | FE26 |
| A | CYN7 |
| A | CMO9 |
| A | CMO10 |
| A | HOH11 |
| A | PRO108 |
| A | ALA109 |
| A | ALA293 |
| A | THR294 |
| A | ILE295 |
| A | PHE296 |
| site_id | AC6 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE SF4 A 1 |
| Chain | Residue |
| A | ILE30 |
| A | LYS34 |
| A | CYS35 |
| A | ILE36 |
| A | GLY37 |
| A | CYS38 |
| A | ASP39 |
| A | CYS41 |
| A | SER42 |
| A | HIS58 |
| A | HIS75 |
| A | CYS76 |
| A | ILE81 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE SF4 A 2 |
| Chain | Residue |
| A | VAL28 |
| A | TYR44 |
| A | CYS45 |
| A | CYS66 |
| A | ASN68 |
| A | CYS69 |
| A | GLY70 |
| A | CYS72 |
| site_id | AC8 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE SF4 A 3 |
| Chain | Residue |
| A | CYS69 |
| A | CYS179 |
| A | PRO180 |
| A | CYS234 |
| A | LYS237 |
| A | MET376 |
| A | ALA377 |
| A | CYS378 |
| A | CYS382 |
| A | GLY385 |
| site_id | AC9 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE PDT A 4 |
| Chain | Residue |
| A | FE25 |
| A | FE26 |
| A | CYN7 |
| A | CYN8 |
| A | CMO9 |
| A | CMO10 |
| A | ALA107 |
| A | PRO108 |
| A | ALA109 |
| A | VAL110 |
| A | LYS237 |
| A | ILE295 |
| A | PHE296 |
| A | GLY297 |
| site_id | BC1 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE CMO A 9 |
| Chain | Residue |
| A | THR145 |
| A | PRO203 |
| A | PDT4 |
| A | FE25 |
| A | FE26 |
| A | CYN7 |
| A | CYN8 |
| A | CMO10 |
| A | HOH11 |
| A | ALA107 |
| A | PRO108 |
| site_id | BC2 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE CMO A 10 |
| Chain | Residue |
| A | PDT4 |
| A | FE25 |
| A | FE26 |
| A | CYN7 |
| A | CYN8 |
| A | CMO9 |
| A | HOH11 |
| A | ALA293 |
| A | THR294 |
| A | ILE295 |
| A | PHE296 |
| site_id | BC3 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE HEM E 80 |
| Chain | Residue |
| A | CYS38 |
| A | GLY55 |
| E | CYS10 |
| E | CYS13 |
| E | HIS14 |
| E | MET23 |
| E | GLY24 |
| E | ALA26 |
| E | LYS27 |
| E | GLN32 |
| E | LEU37 |
| E | MET41 |
| E | TYR44 |
| E | TYR49 |
| E | GLY51 |
| E | GLU52 |
| E | ARG53 |
| E | MET56 |
| E | MET57 |
| E | TYR64 |
Functional Information from PROSITE/UniProt
| site_id | PS00198 |
| Number of Residues | 12 |
| Details | 4FE4S_FER_1 4Fe-4S ferredoxin-type iron-sulfur binding region signature. CiGCDtCSqYCP |
| Chain | Residue | Details |
| A | CYS35-PRO46 | |
| A | CYS66-PRO77 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 27 |
| Details | Domain: {"description":"4Fe-4S ferredoxin-type 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00711","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"10368269","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1HFE","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 20 |
| Details | Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Binding site: {"description":"covalent"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | Binding site: {"description":"axial binding residue"} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1hfe |
| Chain | Residue | Details |
| A | LYS237 | |
| A | CYS178 |
| site_id | MCSA1 |
| Number of Residues | 8 |
| Details | M-CSA 127 |
| Chain | Residue | Details |
| A | GLU156 | proton acceptor, proton donor, proton relay |
| A | GLU159 | proton acceptor, proton donor, proton relay |
| A | CYS178 | proton acceptor, proton donor, proton relay |
| A | SER198 | proton acceptor, proton donor, proton relay |
| A | LYS237 | proton acceptor, proton donor, proton relay |
| A | GLU240 | proton acceptor, proton donor, proton relay |
| A | GLU245 | proton acceptor, proton donor, proton relay |
| A | CYS382 | metal ligand |
