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1DJ9

CRYSTAL STRUCTURE OF 8-AMINO-7-OXONANOATE SYNTHASE (OR 7-KETO-8AMINIPELARGONATE OR KAPA SYNTHASE) COMPLEXED WITH PLP AND THE PRODUCT 8(S)-AMINO-7-OXONANONOATE (OR KAPA). THE ENZYME OF BIOTIN BIOSYNTHETIC PATHWAY.

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0008710molecular_function8-amino-7-oxononanoate synthase activity
A0009058biological_processbiosynthetic process
A0009102biological_processbiotin biosynthetic process
A0016740molecular_functiontransferase activity
A0030170molecular_functionpyridoxal phosphate binding
A0042803molecular_functionprotein homodimerization activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 401
ChainResidue
ALEU147
AARG148
AARG149
AHOH1203
AHOH1245

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 402
ChainResidue
AHOH1238
AARG22
AARG23
AARG101
ALEU256

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 500
ChainResidue
ASER179
AKAM400
AHOH1069
AHOH1092

site_idAC4
Number of Residues25
DetailsBINDING SITE FOR RESIDUE KAM A 400
ChainResidue
AARG21
ASER76
ASER107
AGLY108
APHE109
AHIS133
AGLU175
ASER179
AASP204
AALA206
AHIS207
ATHR233
ALYS236
AILE263
ATYR264
ASER265
ATHR266
AILE348
ATHR352
AMG500
AHOH1004
AHOH1013
AHOH1092
AHOH1161
AHOH1237

Functional Information from PROSITE/UniProt
site_idPS00599
Number of Residues10
DetailsAA_TRANSFER_CLASS_2 Aminotransferases class-II pyridoxal-phosphate attachment site. TFGKGFGVSG
ChainResidueDetails
ATHR233-GLY242

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:10642176
ChainResidueDetails
AARG21
AHIS133
ATHR233
ATHR352

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:10642176, ECO:0000269|PubMed:16557306
ChainResidueDetails
AGLY108
ASER179
AHIS207

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000269|PubMed:10642176, ECO:0000269|PubMed:16557306
ChainResidueDetails
ALYS236

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs0
ChainResidueDetails
AASP204
AGLU175
ALYS236
AHIS133

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1bs0
ChainResidueDetails
AHIS207
APHE238

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1bs0
ChainResidueDetails
AHIS207
ALYS236

site_idMCSA1
Number of Residues7
DetailsM-CSA 430
ChainResidueDetails
AASN47electrostatic stabiliser
AHIS133electrostatic stabiliser, proton shuttle (general acid/base)
AGLU175electrostatic stabiliser
ASER179modifies pKa
AASP204electrostatic stabiliser
AHIS207electrostatic stabiliser, proton shuttle (general acid/base)
ALYS236covalent catalysis, proton shuttle (general acid/base)

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PDB entries from 2024-08-14

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