1BHN
NUCLEOSIDE DIPHOSPHATE KINASE ISOFORM A FROM BOVINE RETINA
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0005886 | cellular_component | plasma membrane |
A | 0006183 | biological_process | GTP biosynthetic process |
A | 0006228 | biological_process | UTP biosynthetic process |
A | 0006241 | biological_process | CTP biosynthetic process |
A | 0006897 | biological_process | endocytosis |
A | 0007399 | biological_process | nervous system development |
A | 0009117 | biological_process | nucleotide metabolic process |
A | 0016301 | molecular_function | kinase activity |
A | 0030154 | biological_process | cell differentiation |
A | 0046872 | molecular_function | metal ion binding |
B | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005634 | cellular_component | nucleus |
B | 0005737 | cellular_component | cytoplasm |
B | 0005886 | cellular_component | plasma membrane |
B | 0006183 | biological_process | GTP biosynthetic process |
B | 0006228 | biological_process | UTP biosynthetic process |
B | 0006241 | biological_process | CTP biosynthetic process |
B | 0006897 | biological_process | endocytosis |
B | 0007399 | biological_process | nervous system development |
B | 0009117 | biological_process | nucleotide metabolic process |
B | 0016301 | molecular_function | kinase activity |
B | 0030154 | biological_process | cell differentiation |
B | 0046872 | molecular_function | metal ion binding |
C | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005634 | cellular_component | nucleus |
C | 0005737 | cellular_component | cytoplasm |
C | 0005886 | cellular_component | plasma membrane |
C | 0006183 | biological_process | GTP biosynthetic process |
C | 0006228 | biological_process | UTP biosynthetic process |
C | 0006241 | biological_process | CTP biosynthetic process |
C | 0006897 | biological_process | endocytosis |
C | 0007399 | biological_process | nervous system development |
C | 0009117 | biological_process | nucleotide metabolic process |
C | 0016301 | molecular_function | kinase activity |
C | 0030154 | biological_process | cell differentiation |
C | 0046872 | molecular_function | metal ion binding |
D | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
D | 0005524 | molecular_function | ATP binding |
D | 0005634 | cellular_component | nucleus |
D | 0005737 | cellular_component | cytoplasm |
D | 0005886 | cellular_component | plasma membrane |
D | 0006183 | biological_process | GTP biosynthetic process |
D | 0006228 | biological_process | UTP biosynthetic process |
D | 0006241 | biological_process | CTP biosynthetic process |
D | 0006897 | biological_process | endocytosis |
D | 0007399 | biological_process | nervous system development |
D | 0009117 | biological_process | nucleotide metabolic process |
D | 0016301 | molecular_function | kinase activity |
D | 0030154 | biological_process | cell differentiation |
D | 0046872 | molecular_function | metal ion binding |
E | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
E | 0005524 | molecular_function | ATP binding |
E | 0005634 | cellular_component | nucleus |
E | 0005737 | cellular_component | cytoplasm |
E | 0005886 | cellular_component | plasma membrane |
E | 0006183 | biological_process | GTP biosynthetic process |
E | 0006228 | biological_process | UTP biosynthetic process |
E | 0006241 | biological_process | CTP biosynthetic process |
E | 0006897 | biological_process | endocytosis |
E | 0007399 | biological_process | nervous system development |
E | 0009117 | biological_process | nucleotide metabolic process |
E | 0016301 | molecular_function | kinase activity |
E | 0030154 | biological_process | cell differentiation |
E | 0046872 | molecular_function | metal ion binding |
F | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
F | 0005524 | molecular_function | ATP binding |
F | 0005634 | cellular_component | nucleus |
F | 0005737 | cellular_component | cytoplasm |
F | 0005886 | cellular_component | plasma membrane |
F | 0006183 | biological_process | GTP biosynthetic process |
F | 0006228 | biological_process | UTP biosynthetic process |
F | 0006241 | biological_process | CTP biosynthetic process |
F | 0006897 | biological_process | endocytosis |
F | 0007399 | biological_process | nervous system development |
F | 0009117 | biological_process | nucleotide metabolic process |
F | 0016301 | molecular_function | kinase activity |
F | 0030154 | biological_process | cell differentiation |
F | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | A |
Number of Residues | 6 |
Details | C-GMP AND GDP ARE FOUND (EACH WITH HALF OCCUPANCY) IN THE NUCLEOTIDE BINDING SITE. |
Chain | Residue |
A | LYS12 |
A | TYR52 |
A | VAL112 |
A | ASN115 |
A | HIS118 |
A | GLU152 |
site_id | AC1 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE 35G A 160 |
Chain | Residue |
A | LYS12 |
A | TYR52 |
A | PHE60 |
A | ARG105 |
A | VAL112 |
A | ASN115 |
A | HIS118 |
A | GDP161 |
A | HOH502 |
site_id | AC2 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE GDP A 161 |
Chain | Residue |
A | LYS12 |
A | PHE60 |
A | ARG88 |
A | THR94 |
A | ARG105 |
A | VAL112 |
A | GLY113 |
A | ASN115 |
A | HIS118 |
A | 35G160 |
A | HOH502 |
B | GLU152 |
site_id | AC3 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE 35G B 160 |
Chain | Residue |
B | LYS12 |
B | TYR52 |
B | PHE60 |
B | ARG105 |
B | VAL112 |
B | ASN115 |
B | HIS118 |
B | GDP161 |
B | HOH372 |
B | HOH503 |
C | GLU152 |
site_id | AC4 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE GDP B 161 |
Chain | Residue |
B | LYS12 |
B | TYR52 |
B | LEU55 |
B | PHE60 |
B | LEU64 |
B | ARG88 |
B | VAL112 |
B | ASN115 |
B | HIS118 |
B | GLY119 |
B | 35G160 |
B | HOH204 |
B | HOH372 |
B | HOH503 |
C | GLU152 |
site_id | AC5 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE 35G C 160 |
Chain | Residue |
C | LYS12 |
C | TYR52 |
C | PHE60 |
C | LEU64 |
C | THR94 |
C | ASN115 |
C | HIS118 |
C | GDP161 |
C | HOH238 |
C | HOH505 |
site_id | AC6 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE GDP C 161 |
Chain | Residue |
C | ARG105 |
C | VAL112 |
C | ASN115 |
C | 35G160 |
C | HOH497 |
C | HOH505 |
A | GLU152 |
C | LYS12 |
C | PHE60 |
C | LEU64 |
C | ARG88 |
C | THR94 |
site_id | AC7 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE 35G D 160 |
Chain | Residue |
D | LYS12 |
D | TYR52 |
D | PHE60 |
D | LEU64 |
D | VAL112 |
D | GLY113 |
D | ASN115 |
D | HIS118 |
D | GDP161 |
site_id | AC8 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE GDP D 161 |
Chain | Residue |
D | LYS12 |
D | LEU55 |
D | PHE60 |
D | LEU64 |
D | ARG88 |
D | THR94 |
D | ARG105 |
D | VAL112 |
D | ASN115 |
D | 35G160 |
D | HOH285 |
D | HOH507 |
site_id | AC9 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE 35G E 160 |
Chain | Residue |
E | LYS12 |
E | PHE60 |
E | THR94 |
E | ASN115 |
E | HIS118 |
E | GDP161 |
E | HOH221 |
F | GLU152 |
site_id | B |
Number of Residues | 6 |
Details | C-GMP AND GDP ARE FOUND (EACH WITH HALF OCCUPANCY) IN THE NUCLEOTIDE BINDING SITE. |
Chain | Residue |
B | ASN115 |
B | HIS118 |
B | GLU152 |
B | LYS12 |
B | TYR52 |
B | VAL112 |
site_id | BC1 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE GDP E 161 |
Chain | Residue |
E | LYS12 |
E | PHE60 |
E | LEU64 |
E | ARG88 |
E | THR94 |
E | VAL112 |
E | ASN115 |
E | 35G160 |
E | HOH221 |
E | HOH266 |
F | GLU152 |
site_id | BC2 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE 35G F 160 |
Chain | Residue |
D | GLU152 |
F | LYS12 |
F | TYR52 |
F | PHE60 |
F | ARG105 |
F | VAL112 |
F | GLY113 |
F | ASN115 |
F | HIS118 |
F | GDP161 |
F | HOH377 |
F | HOH494 |
site_id | BC3 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE GDP F 161 |
Chain | Residue |
D | GLU152 |
F | LYS12 |
F | LEU55 |
F | PHE60 |
F | LEU64 |
F | ARG88 |
F | THR94 |
F | VAL112 |
F | ASN115 |
F | HIS118 |
F | 35G160 |
F | HOH377 |
F | HOH494 |
F | HOH495 |
site_id | C |
Number of Residues | 6 |
Details | C-GMP AND GDP ARE FOUND (EACH WITH HALF OCCUPANCY) IN THE NUCLEOTIDE BINDING SITE. |
Chain | Residue |
C | LYS12 |
C | TYR52 |
C | VAL112 |
C | ASN115 |
C | HIS118 |
C | GLU152 |
site_id | D |
Number of Residues | 6 |
Details | C-GMP AND GDP ARE FOUND (EACH WITH HALF OCCUPANCY) IN THE NUCLEOTIDE BINDING SITE. |
Chain | Residue |
D | LYS12 |
D | TYR52 |
D | VAL112 |
D | ASN115 |
D | HIS118 |
D | GLU152 |
site_id | E |
Number of Residues | 6 |
Details | C-GMP AND GDP ARE FOUND (EACH WITH HALF OCCUPANCY) IN THE NUCLEOTIDE BINDING SITE. |
Chain | Residue |
E | LYS12 |
E | TYR52 |
E | VAL112 |
E | ASN115 |
E | HIS118 |
E | GLU152 |
site_id | F |
Number of Residues | 6 |
Details | C-GMP AND GDP ARE FOUND (EACH WITH HALF OCCUPANCY) IN THE NUCLEOTIDE BINDING SITE. |
Chain | Residue |
F | LYS12 |
F | TYR52 |
F | VAL112 |
F | ASN115 |
F | HIS118 |
F | GLU152 |
Functional Information from PROSITE/UniProt
site_id | PS00469 |
Number of Residues | 9 |
Details | NDPK Nucleoside diphosphate kinase (NDPK) active site signature. NiiHGSDSV |
Chain | Residue | Details |
A | ASN115-VAL123 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | ACT_SITE: Pros-phosphohistidine intermediate |
Chain | Residue | Details |
A | GLY119 | |
B | GLY119 | |
C | GLY119 | |
D | GLY119 | |
E | GLY119 | |
F | GLY119 |
site_id | SWS_FT_FI2 |
Number of Residues | 36 |
Details | BINDING: |
Chain | Residue | Details |
A | PRO13 | |
B | ASN95 | |
B | GLY106 | |
B | ILE116 | |
C | PRO13 | |
C | PHE61 | |
C | VAL89 | |
C | ASN95 | |
C | GLY106 | |
C | ILE116 | |
D | PRO13 | |
A | PHE61 | |
D | PHE61 | |
D | VAL89 | |
D | ASN95 | |
D | GLY106 | |
D | ILE116 | |
E | PRO13 | |
E | PHE61 | |
E | VAL89 | |
E | ASN95 | |
E | GLY106 | |
A | VAL89 | |
E | ILE116 | |
F | PRO13 | |
F | PHE61 | |
F | VAL89 | |
F | ASN95 | |
F | GLY106 | |
F | ILE116 | |
A | ASN95 | |
A | GLY106 | |
A | ILE116 | |
B | PRO13 | |
B | PHE61 | |
B | VAL89 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1nsp |
Chain | Residue | Details |
A | ASN115 | |
A | LYS12 |
site_id | CSA10 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1nsp |
Chain | Residue | Details |
D | TYR52 | |
D | LYS12 |
site_id | CSA11 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1nsp |
Chain | Residue | Details |
E | TYR52 | |
E | LYS12 |
site_id | CSA12 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1nsp |
Chain | Residue | Details |
F | TYR52 | |
F | LYS12 |
site_id | CSA2 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1nsp |
Chain | Residue | Details |
B | ASN115 | |
B | LYS12 |
site_id | CSA3 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1nsp |
Chain | Residue | Details |
C | ASN115 | |
C | LYS12 |
site_id | CSA4 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1nsp |
Chain | Residue | Details |
D | ASN115 | |
D | LYS12 |
site_id | CSA5 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1nsp |
Chain | Residue | Details |
E | ASN115 | |
E | LYS12 |
site_id | CSA6 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1nsp |
Chain | Residue | Details |
F | ASN115 | |
F | LYS12 |
site_id | CSA7 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1nsp |
Chain | Residue | Details |
A | TYR52 | |
A | LYS12 |
site_id | CSA8 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1nsp |
Chain | Residue | Details |
B | TYR52 | |
B | LYS12 |
site_id | CSA9 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1nsp |
Chain | Residue | Details |
C | TYR52 | |
C | LYS12 |