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1BE4

NUCLEOSIDE DIPHOSPHATE KINASE ISOFORM B FROM BOVINE RETINA

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000287molecular_functionmagnesium ion binding
A0004536molecular_functionDNA nuclease activity
A0004550molecular_functionnucleoside diphosphate kinase activity
A0005524molecular_functionATP binding
A0005525molecular_functionGTP binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005769cellular_componentearly endosome
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0006183biological_processGTP biosynthetic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
A0006259biological_processDNA metabolic process
A0006897biological_processendocytosis
A0007399biological_processnervous system development
A0007595biological_processlactation
A0008408molecular_function3'-5' exonuclease activity
A0009117biological_processnucleotide metabolic process
A0016020cellular_componentmembrane
A0016301molecular_functionkinase activity
A0016310biological_processphosphorylation
A0016740molecular_functiontransferase activity
A0030154biological_processcell differentiation
A0030879biological_processmammary gland development
A0032587cellular_componentruffle membrane
A0042802molecular_functionidentical protein binding
A0043024molecular_functionribosomal small subunit binding
A0046872molecular_functionmetal ion binding
A0050679biological_processpositive regulation of epithelial cell proliferation
B0000166molecular_functionnucleotide binding
B0000287molecular_functionmagnesium ion binding
B0004536molecular_functionDNA nuclease activity
B0004550molecular_functionnucleoside diphosphate kinase activity
B0005524molecular_functionATP binding
B0005525molecular_functionGTP binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005769cellular_componentearly endosome
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0006183biological_processGTP biosynthetic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
B0006259biological_processDNA metabolic process
B0006897biological_processendocytosis
B0007399biological_processnervous system development
B0007595biological_processlactation
B0008408molecular_function3'-5' exonuclease activity
B0009117biological_processnucleotide metabolic process
B0016020cellular_componentmembrane
B0016301molecular_functionkinase activity
B0016310biological_processphosphorylation
B0016740molecular_functiontransferase activity
B0030154biological_processcell differentiation
B0030879biological_processmammary gland development
B0032587cellular_componentruffle membrane
B0042802molecular_functionidentical protein binding
B0043024molecular_functionribosomal small subunit binding
B0046872molecular_functionmetal ion binding
B0050679biological_processpositive regulation of epithelial cell proliferation
C0000166molecular_functionnucleotide binding
C0000287molecular_functionmagnesium ion binding
C0004536molecular_functionDNA nuclease activity
C0004550molecular_functionnucleoside diphosphate kinase activity
C0005524molecular_functionATP binding
C0005525molecular_functionGTP binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005769cellular_componentearly endosome
C0005829cellular_componentcytosol
C0005886cellular_componentplasma membrane
C0006183biological_processGTP biosynthetic process
C0006228biological_processUTP biosynthetic process
C0006241biological_processCTP biosynthetic process
C0006259biological_processDNA metabolic process
C0006897biological_processendocytosis
C0007399biological_processnervous system development
C0007595biological_processlactation
C0008408molecular_function3'-5' exonuclease activity
C0009117biological_processnucleotide metabolic process
C0016020cellular_componentmembrane
C0016301molecular_functionkinase activity
C0016310biological_processphosphorylation
C0016740molecular_functiontransferase activity
C0030154biological_processcell differentiation
C0030879biological_processmammary gland development
C0032587cellular_componentruffle membrane
C0042802molecular_functionidentical protein binding
C0043024molecular_functionribosomal small subunit binding
C0046872molecular_functionmetal ion binding
C0050679biological_processpositive regulation of epithelial cell proliferation
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PCG A 160
ChainResidue
ATHR94
AGLY113
AASN115
AHIS118
AHOH300
AHOH394
BGLU152
ALYS12
ATYR52
APHE60

site_idAC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PCG B 160
ChainResidue
BLYS12
BTYR52
BPHE60
BARG88
BTHR94
BVAL112
BASN115
BHIS118
BHOH278
CGLU152

site_idAC3
Number of Residues13
DetailsBINDING SITE FOR RESIDUE PCG C 160
ChainResidue
AGLU152
CLYS12
CTYR52
CPHE60
CLEU64
CTHR94
CVAL112
CASN115
CHIS118
CHOH304
CHOH332
CHOH401
CHOH443

site_idNUL
Number of Residues6
DetailsC-GMP BINDING SITE.
ChainResidue
ALYS12
ATYR52
AVAL112
AASN115
AHIS118
AGLU152

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDPK Nucleoside diphosphate kinase (NDPK) active site signature. NiiHGSDSV
ChainResidueDetails
AASN115-VAL123

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Pros-phosphohistidine intermediate
ChainResidueDetails
AGLY119
BGLY119
CGLY119

site_idSWS_FT_FI2
Number of Residues18
DetailsBINDING:
ChainResidueDetails
APRO13
BASN95
BGLY106
BILE116
CPRO13
CPHE61
CVAL89
CASN95
CGLY106
CILE116
APHE61
AVAL89
AASN95
AGLY106
AILE116
BPRO13
BPHE61
BVAL89

218853

PDB entries from 2024-04-24

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