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11BG

A POTENTIAL ALLOSTERIC SUBSITE GENERATED BY DOMAIN SWAPPING IN BOVINE SEMINAL RIBONUCLEASE

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004519molecular_functionendonuclease activity
A0004522molecular_functionribonuclease A activity
A0004540molecular_functionRNA nuclease activity
A0005576cellular_componentextracellular region
A0016829molecular_functionlyase activity
A0042802molecular_functionidentical protein binding
A0050830biological_processdefense response to Gram-positive bacterium
A0051607biological_processdefense response to virus
B0003676molecular_functionnucleic acid binding
B0004519molecular_functionendonuclease activity
B0004522molecular_functionribonuclease A activity
B0004540molecular_functionRNA nuclease activity
B0005576cellular_componentextracellular region
B0016829molecular_functionlyase activity
B0042802molecular_functionidentical protein binding
B0050830biological_processdefense response to Gram-positive bacterium
B0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 125
ChainResidue
AGLN11
AHIS12
AHOH219
BLYS41
BHIS119
BPHE120
BU2G133

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 126
ChainResidue
ALYS39
ALYS41
APRO42
AU2G132
AHOH214
ASER3
AALA4

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 127
ChainResidue
ALYS7
AGLY112
ALYS113
AHOH204
BLYS39
BHOH244

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 128
ChainResidue
ASER18
APRO19
ASER20
ASER21
ASER21
ASER22
AHOH316
BGLN101

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 129
ChainResidue
BSER20
BSER20
BSER21
BSER21
BSER22
BSER22
BSER23
BSER23

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 134
ChainResidue
ALYS39
AU2G132
AHOH301
BLYS7
BGLY112
BLYS113
BHOH235

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 135
ChainResidue
ALYS41
AHIS119
APHE120
AU2G130
AU2G132
AHOH249
BGLN11
BHIS12

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 136
ChainResidue
BSER3
BALA4
BLYS39
BPRO42
BHOH245
BHOH263
BHOH320

site_idAC9
Number of Residues15
DetailsBINDING SITE FOR RESIDUE U2G A 130
ChainResidue
AVAL43
AASN44
ATHR45
ALYS66
AARG85
ALYS104
APHE120
AASP121
AALA122
ASER123
AU2G132
ASO4135
AHOH231
AHOH295
BHIS12

site_idBC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE U2G A 131
ChainResidue
AASP14
AASN24
AASN27
AASN94
ACYS95
AHOH267
AHOH291
AHOH318
BCYS32
BARG33
BSER89
BASN94
BHOH302

site_idBC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE U2G A 132
ChainResidue
ALYS1
ASER3
ALYS39
ALYS41
APRO42
ASO4126
AU2G130
ASO4134
ASO4135
AHOH279
BGLN11

site_idBC3
Number of Residues13
DetailsBINDING SITE FOR RESIDUE U2G B 133
ChainResidue
BVAL43
BASN44
BTHR45
BASN67
BARG85
BPHE120
BASP121
BALA122
BSER123
BHOH310
BHOH324
AHIS12
ASO4125

Functional Information from PROSITE/UniProt
site_idPS00127
Number of Residues7
DetailsRNASE_PANCREATIC Pancreatic ribonuclease family signature. CKpvNTF
ChainResidueDetails
ACYS40-PHE46

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor
ChainResidueDetails
AHIS12
BHIS12

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
AHIS119
BHIS119

site_idSWS_FT_FI3
Number of Residues10
DetailsBINDING:
ChainResidueDetails
ALYS7
BARG85
AARG10
ALYS41
ALYS66
AARG85
BLYS7
BARG10
BLYS41
BLYS66

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Deamidated asparagine; by deterioration => ECO:0000269|PubMed:2057997
ChainResidueDetails
AASN67
BASN67

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1rbn
ChainResidueDetails
APHE120
AHIS119
AHIS12
ALYS41

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1rbn
ChainResidueDetails
BPHE120
BHIS119
BHIS12
BLYS41

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1rbn
ChainResidueDetails
AHIS119
AHIS12
ALYS41

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1rbn
ChainResidueDetails
BHIS119
BHIS12
BLYS41

223532

PDB entries from 2024-08-07

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