9YDG

Crystal structure of the human DCAF1 WDR domain in complex with OICR-41074

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	CLSI BEAMLINE 08B1-1
Synchrotron site	CLSI
Beamline	08B1-1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2024-05-25
Detector	DECTRIS PILATUS3 S 6M
Wavelength(s)	1.18049
Spacegroup name	P 1 21 1
Unit cell lengths	49.067, 87.819, 73.680
Unit cell angles	90.00, 98.27, 90.00

Refinement procedure

Resolution	48.600 - 1.540
R-factor	0.1896
Rwork	0.188
R-free	0.21788
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.006
RMSD bond angle	1.493
Data reduction software	HKL-3000
Data scaling software	HKL-3000
Phasing software	REFMAC
Refinement software	REFMAC (5.8.0430)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	50.000	50.000	1.570
High resolution limit [Å]	1.540	4.180	1.540
Rmerge	0.051	0.029	0.602
Rmeas	0.055	0.031	0.668
Rpim	0.021	0.012	0.282
Total number of observations	565879
Number of reflections	89670	4666	3780
<I/σ(I)>	7.9
Completeness [%]	98.4	100	83.3
Redundancy	6.3	6.6	4.9
CC(1/2)	0.999	0.999	0.843

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP		291	20% w/v PEG 3350, 0.2 M Potassium Fluoride