9RY6
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with SRI1.65 at room temperature
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE VMXi |
| Synchrotron site | Diamond |
| Beamline | VMXi |
| Temperature [K] | 292 |
| Detector technology | PIXEL |
| Collection date | 2024-10-08 |
| Detector | DECTRIS EIGER2 X 4M |
| Wavelength(s) | 0.7749 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 37.580, 33.382, 61.305 |
| Unit cell angles | 90.00, 97.94, 90.00 |
Refinement procedure
| Resolution | 60.720 - 1.740 |
| R-factor | 0.1587 |
| Rwork | 0.156 |
| R-free | 0.18810 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.005 |
| RMSD bond angle | 0.773 |
| Data reduction software | xia2.multiplex |
| Data scaling software | xia2.multiplex |
| Phasing software | DIMPLE |
| Refinement software | PHENIX (1.20) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 60.720 | 1.770 |
| High resolution limit [Å] | 1.740 | 1.740 |
| Rpim | 0.063 | 2.250 |
| Number of reflections | 15745 | 763 |
| <I/σ(I)> | 12.6 | 0.8 |
| Completeness [%] | 100.0 | 100 |
| Redundancy | 39.5 | 19.5 |
| CC(1/2) | 0.997 | 0.369 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 292 | 0.1 M MES (pH 6.50) and 30 % w/v PEG 3000 |
